Aging cell

Cell Culture Selection Finds New DNA Molecules That Specifically Target Aging Cells

Updated

Abstract

Essence

An unbiased cell-culture selection approach produced DNA aptamers that selectively recognize senescent cells and a fibronectin-related target.

Evidence

This was a cell-based reagent discovery study using senescent and non-senescent mouse fibroblasts to select DNA aptamers, followed by target identification and validation in cultured cells, aged mouse tissues, and an INK-ATTAC mouse model with p16-expressing cell removal.

Caveat

The findings mainly establish a preclinical detection reagent in mouse systems rather than a universal standalone marker across species or clinical settings.

Simplified

Key numbers

921 pM
Binding Affinity of 6756
Equilibrium dissociation constant for 6756 binding to .
579 pM
Binding Affinity of
Equilibrium dissociation constant for binding to .
1.80 ± 0.41
Enrichment Ratio
Ratio of enrichment in 6756 compared to negative control 6766.

Key figures

FIGURE 4
Binding and identification of as the target protein for 6756 and 6762
Highlights strong, specific binding of aptamers 6756 and 6762 to fibronectin, confirming their target protein
ACEL-24-e70245-g006
  • Panel A
    shows fibronectin enrichment with aptamers 6756 and 6762 compared to negative control 6766 and bead-only control
  • Panel B
    Coomassie-stained gel shows purified fibronectin binding to aptamers 6756 and 6762 but not to negative control 6766 or beads alone
  • Panels C
    sensograms show high-affinity binding of aptamers 6756 ( = 921 pM) and 6762 (KD = 579 pM) to fibronectin, with no binding for negative control 6766; 6762 also binds fibronectin in DMEM with 10% FBS
FIGURE 5
Mouse lung tissue stained with and control 6766 across different ages
Highlights increased aptamer 6762 staining intensity in older mouse lungs, spotlighting age-related tissue changes
ACEL-24-e70245-g007
  • Panels 3 to 18 months
    Lung tissue sections stained with control 6766 or aptamer 6762 show low green fluorescence signal at 3, 6, 12, and 18 months with marking nuclei in blue
  • Panels 22 months
    Aptamer 6762 staining shows visibly brighter green fluorescence than control 6766, with 3× enlarged inlays highlighting localized signal; nuclei stained with DAPI in blue
  • Panels 30 months
    Aptamer 6762 staining remains visibly brighter and more extensive than control 6766, with 3× enlarged inlays showing detailed regions; nuclei stained with DAPI in blue
FIGURE 6
vs : and staining in tissue samples
Highlights reduced aptamer 6762 signal after p16-positive cell removal, contrasting stable fibronectin levels
ACEL-24-e70245-g003
  • Panels top four rows
    Fluorescence images show aptamer 6762 (green), fibronectin (red), and nuclei (blue) staining under Vehicle and AP conditions
  • Panels bottom row graphs
    Quantification shows significantly reduced aptamer 6762 fluorescence per nuclei in AP compared to Vehicle, while fibronectin fluorescence per nuclei shows no significant difference
FIGURE 1
Control vs -challenged : markers and gene expression changes
Highlights increased senescence-associated markers and reduced proliferation in etoposide-treated cells versus controls.
ACEL-24-e70245-g001
  • Panel A
    Bright field images show staining with visibly more blue (positive) cells in etoposide-challenged MAFs; quantification shows a significantly higher percent of SA-β-Gal positive cells in etoposide group.
  • Panel B
    quantifies mRNA levels of senescence markers p16, p21, IL-6, MCP-1, MMP-9, and proliferation marker Ki67; etoposide group shows significantly increased expression of p16, p21, IL-6, MMP-9 and decreased Ki67, while MCP-1 increase is not significant.
FIGURE 2
Selection process and enrichment of DNA binding senescent cells
Highlights increasing enrichment of specific DNA sequences that preferentially bind senescent cells over selection rounds.
ACEL-24-e70245-g005
  • Panel A
    Schematic of the selection procedure starting from a large pool of single-stranded DNA sequences, with on control cells followed by on senescent cells to isolate aptamer candidates.
  • Panel B
    Quantification of DNA library recovery across selection rounds showing low recovery initially, then a sharp increase in percent recovery at rounds 7 and 8, with a slight decrease at round 9.
  • Panel C
    Prevalence of selected aptamer candidates over selection rounds, with candidates 6756 and 6757 visibly increasing in percentage of the pool, especially candidate 6756 at round 9.
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Full Text

What this is

  • This research focuses on identifying DNA aptamers that specifically bind to senescent cells, a state of irreversible cell cycle arrest.
  • Current methods for detecting senescent cells rely on multiple biomarkers, with no universal indicators available.
  • The study employs an unbiased selection method to isolate aptamers from large DNA libraries, demonstrating their specificity for senescent mouse cells.
  • Findings include the identification of fibronectin as a target for selected aptamers and their increased binding in aged tissues.

Essence

  • Unbiased selection of DNA aptamers successfully identifies specific reagents for senescent cells, targeting fibronectin. The aptamers show increased binding in aged tissues, indicating potential for future applications in aging research.

Key takeaways

  • Aptamers were successfully isolated that specifically bind to senescent mouse cells, demonstrating the effectiveness of the unbiased selection method.
  • Fibronectin was identified as a molecular target for two selected aptamers, suggesting its role in the context of cellular .
  • Increased aptamer staining was observed in aged mouse tissues, indicating a correlation between aptamer binding and burden.

Caveats

  • The study primarily focuses on mouse models, which may limit the applicability of findings to human .
  • Further validation is necessary to determine the universal applicability of the identified aptamers across different cell types and conditions.

Definitions

  • senescence: An irreversible state of cell cycle arrest often associated with aging and stress-induced damage.

Simplified

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