What this is
- This article introduces the first for continuous of suspended vials.
- The model simulates the entire process, including freezing, primary drying, and secondary drying.
- It incorporates key transport phenomena and is validated against experimental data.
- The model aims to optimize biopharmaceutical manufacturing processes, particularly for mRNA vaccines.
Essence
- The developed accurately predicts critical parameters throughout the continuous process, enhancing the efficiency and reliability of biopharmaceutical manufacturing.
Key takeaways
- The model captures essential transport phenomena in freezing, primary drying, and secondary drying, providing a comprehensive tool for process optimization.
- Validation against experimental data shows that the model can predict product temperature and moisture content with high accuracy, essential for ensuring product quality.
- The model's capability to simulate the entire process in less than 1 second on a standard laptop makes it practical for real-time applications in manufacturing.
Caveats
- The model's accuracy depends on the quality of input parameters, which may require experimental validation for specific applications.
- While the model is validated for various conditions, its performance under all possible operational scenarios remains to be fully explored.
Definitions
- lyophilization: A low-temperature, low-pressure dehydration process used to improve the stability of drug products.
- mechanistic model: A mathematical representation that captures the underlying physical processes governing a system, allowing for predictions of its behavior.
Simplified
Introduction
Lyophilization, also known as freeze drying, is a low‐temperature, low‐pressure dehydration process used for improving the stability of various drug products in the biopharmaceutical industry.[1] By removing the liquid component (usually water) from the product, the final lyophilized product becomes more stable, hence longer shelf life. One of the most recent applications of lyophilization is to provide long‐term stability for the mRNA COVID‐19 vaccines at room temperature.[2, 3] This advancement eliminates the need for an ultra‐cold supply chain for maintaining the stability of mRNA, which helps facilitate the storage and distribution of mRNA drug product across the world Advancement in lyophilization technology could therefore play a crucial role in the future of mRNA manufacturing and the biopharmaceutical industry in general.
A typical lyophilization process consists of three main steps, namely 1) freezing, 2) primary drying, and 3) secondary drying. During freezing, the product and water in a vial are cooled such that most of the liquid (free water) is frozen, with the remaining fraction (bound water) retaining its liquid state adsorbed to the solid material between the ice crystals.[4] In primary drying, the free water in the form of ice crystals is removed via sublimation under vacuum. Finally, in secondary drying, the product is heated further such that the bound water can be removed via desorption.
Although the current trends in the biopharmaceutical industry largely focus on the adoption of continuous manufacturing, the majority of production‐scale lyophilization is still being operated in batch mode,[5, 6] with most research efforts dedicated to process optimization, monitoring, and control to ensure that the final product quality meets the regulations.[6, 7] Conventional lyophilization of unit doses usually entails a batch of vials containing drug products situated on the cooling/heating shelf where the entire lyophilization process occurs. A number of continuous lyophilization concepts for (bio)pharmaceutical products have been proposed, including spray freeze drying[8] and spin freezing[5] (see a comprehensive review of continuous lyophilization technologies in Ref. [6]). A novel lyophilization technology has been recently proposed by Ref. [7], in which vials are suspended and continuously move along the process without any complicated motions (e.g., as in spin or spray freeze drying), allowing the product quality control to be done more conveniently and rigorously.
Mathematical models have been widely used to assist the design, optimization, and control of lyophilization processes. Since the key phenomena in lyophilization are underpinned by heat and mass transfer theories, process models for lyophilization are mostly physics‐based rather than data‐driven. Mechanistic models for batch/conventional lyophilization have been extensively discussed in the literature for many decades, e.g., for freezing,[9, 10, 11, 12, 13] primary drying,[4, 9, 14, 15, 16, 17, 18, 19, 20, 21, 22] and secondary drying.[4, 14, 15, 16, 17, 18, 23, 24, 25] Only a few models for continuous lyophilization are available. For example, a model for the primary drying step in continuous drying of spin frozen vials was proposed by Ref. [26]. A model for the freezing step was also developed for spin freezing.[27] For spray freeze drying,[28] developed a detailed model that can predict the temperature of droplets during the cooling and freezing phases. Nevertheless, there is no model for the suspended‐vial configuration. Besides, none of the published models for continuous lyophilization considers a complete lyophilization cycle (all three steps), which is critical for optimization and control of the entire continuous operation.
This article presents the first mechanistic model for continuous lyophilization of suspended vials. The model is developed to capture important transport phenomena in the process, including cooling and stochastic/controlled ice nucleation during the freezing step, sublimation of ice crystals during the primary drying step, and desorption of bound water during the secondary drying step. The proposed model is validated and employed to predict the evolution of critical process parameters for the entire lyophilization process, which is subsequently demonstrated for model‐based design and optimization.
This article is organized as follows. Section gives an overview of conventional (batch) and continuous lyophilization technologies. Section extensively describes the development of our mechanistic model, supported by a comprehensive review on a variety of modeling strategies used in the literature. Section discussed the numerical methods required for solving and simulating the model equations efficiently. Section details the model validation and showcases various applications of the validated model. Finally, Section summarizes the study and briefly discusses possible future work. 2 3 4 5 6
Process Description
This work considers lyophilization of unit doses, in which the product is introduced into a vial prior to being lyophilized. This type of lyophilization, compared to lyophilization of bulk material, is more preferable in (bio)pharmaceutical applications due to its accurate dosage and better control of sterility.[6] Therefore, results and discussion presented in this article are based entirely on lyophilization of unit doses.
Batch lyophilization
The majority of lyophilization processes in the (bio)pharmaceutical industry have been operated in batch mode for many decades. The conventional configuration typically comprises a large number of vials located on the cooling/heating shelf (Figure 1A). The bottom shelf, whose temperature can be manipulated, is used to cool the vials during the freezing step and heat the vials during the drying steps. In this case, the freezing and drying processes take place in the same space but at different times.
Several drawbacks associated with batch lyophilization are extensively discussed in Ref. [6, 7]. Typical issues of any batch process include batch‐to‐batch variability, quality control, process downtime, and operational flexibility. Another disadvantage that is specific to the configuration illustrated in Figure 1A is non‐uniformity in heat transfer. For example, vials located on the side and corner of the shelf are typically affected by thermal radiation from the chamber walls, whereas the effect is almost negligible for center vials. Variability in heat transfer conditions could result in different crystal structures and drying times, hence variation in the final product quality. Consequently, process control and optimization are not straightforward. These known issues motivate the development of a continuous lyophilization concept that can be practically implemented in an industrial scale.

A) Conventional batch lyophilization of unit doses. A number of vials are placed on the cooling/heating shelf. B) Continuous lyophilization of suspended vials. A number of vials are suspended and move continuously through the lyophilizer.
Continuous Lyophilization
A comprehensive review of continuous lyophilization technologies is given in Ref. [6]. To summarize, the current continuous lyophilization technologies can be divided into four main categories. The first category employs equipment that continuously moves a bulk product through the process, e.g., a conveyor[29] or a revolving plate with holes.[30] Another type of technology relies on the concept of spray freeze drying, in which a liquid product is sprayed through nozzles to create small liquid droplets with a high surface‐to‐volume ratio, greatly improving heat, and mass transfer in the process.[8, 28] Both aforementioned approaches have been proposed for lyophilization of bulk material. For lyophilization of unit doses, a well‐known technique uses spin freezing to accelerate the freezing process and improve the uniformity of heat transfer in a product.[5]
Finally, the current state‐of‐the‐art continuous lyophilization technology for unit doses has been recently proposed by Ref. [7]. This technology employs the suspended‐vial configuration as illustrated in Figure 1B, where all vials are suspended and continuously move through the freezing and drying chambers, without any contact between the vials and shelf. Unlike conventional lyophilizers, the freezing and drying processes occur in different locations/chambers of the equipment. This suspended‐vial technology has several benefits over the existing ones. First, heat transfer in the equipment is uniform because every vial experiences the exact same heat transfer conditions along the way. In addition, there is a dedicated chamber for controlling the ice nucleation process to help reduce variation in the crystal structure caused by the stochastic nature of ice nucleation. Second, the process does not involve any complicated motions (e.g., high speed flow in spray freeze drying), resulting in a simpler design and more reliable quality control. Third, there is no contact between the vials and cooling/heating shelf, minimizing the risk of having fine particles that could lead to contamination, which is crucial in (bio)pharmaceutical applications. Finally, with the automatic filling and load‐lock systems, the process is fully continuous.
The mechanistic model developed in this work is based on this suspended‐vial configuration as illustrated in Figure 1B, the current state‐of‐the‐art continuous lyophilization technology for unit doses. Detailed modeling strategies and model equations are discussed in the next section (Section 3), while information and discussion related to the equipment design can be found in Ref. [7].
Mechanistic Modeling
This section details the development of a mechanistic model for continuous lyophilization of suspended vials (Figure 1B). The section starts by discussing existing models and modeling strategies in the literature, and then derives the models for all three steps of lyophilization, namely 1) freezing, 2) primary drying, and 3) secondary drying.
Review of the Existing Models and Modeling Strategies
Mechanistic modeling for conventional/batch lyophilization has been studied for many decades, with various models that have been proposed and used in both academia and industry. Despite the fact that the models are for batch processes, modeling strategies underpinning those models can be used as a basis for the development of a continuous lyophilization model for suspended vials. While some past reviews briefly discuss the literature on mechanistic modeling of lyophilization,[4, 19] no article systematically summarizes the available modeling strategies and comprehensively discusses pros and cons of each model variation. Hence, this section first provides a systematic overview of the mechanistic modeling strategies for lyophilization, discusses pros and cons of each model variation in detail, and finally concludes with the optimal modeling strategies used in this work. The published models for continuous lyophilization mentioned in Section 1 are based on the spin and spray freeze drying, which are completely different from the suspended‐vial configuration, and so those modeling strategies are not discussed here.
Figure 2 summarizes various modeling strategies for the key steps of lyophilization, namely freezing, primary drying, and secondary drying. Published models mostly focus on primary drying because this step is recognized as the most time‐consuming and expensive step, thus the first target for process optimization and improvement. A variety of modeling strategies are available, ranging from the simplest lumped capacity model to the high‐fidelity multidimensional model. Models for secondary drying have also been well developed because the final product quality (i.e., moisture content) is governed by this step. The mechanistic modeling of freezing receives less attention in the lyophilization literature due to its complicated behavior, including supercooling and stochastic ice nucleation. As a result, the number of available models for freezing is more limited compared to that of the drying models.

Modeling strategies for the freezing, primary drying, and secondary drying steps in lyophilization. The strategies used in this article are highlighted.
Modeling Strategies for the Freezing Step
Modeling the freezing step is most complicated among the three steps of lyophilization; the blue column in Figure 2 highlights notable modeling strategies for this step. Due to the limited number of freezing models, we expand our literature search beyond lyophilization to get more complete insights. A conventional technique for modeling the freezing process of pure substance is to apply the concept of a moving boundary problem (aka Stefan problem) where the temperature at the freezing front (solid–liquid interface) is assumed to be constant at the freezing point.[31] Nevertheless, this strategy has not been commonly used in the lyophilization community because it is widely known that the actual freezing process entails supercooling and stochastic ice nucleation, and so the temperature of a product usually goes below the freezing point.[10, 12]
A more common but more complicated strategy is to consider the supercooling period and incorporate the heat transfer associated with ice nucleation as done in Ref. [9]. Recently,[12] introduced a state‐of‐the‐art freezing model that incorporates the stochastic nature of ice nucleation[32] and considers heat transfer among multiple vials in batch lyophilization using a lumped capacity model. The same authors subsequently proposed a model for 2D freezing when thermal gradients are significant, e.g., freezing of a product in a large vessel.[13] In Appendix A, we provide a detailed analysis using the relevant dimensionless group to compare between the lumped capacity model and model with thermal gradients and show that the lumped capacity model is sufficiently accurate for lyophilization of unit doses in general.
The most complicated part of freezing is to predict the crystal size or pore size distribution, which directly affects the solid structure and mass transfer resistance during sublimation in primary drying. While some recent studies have built mechanistic models with the goal of predicting pore size distribution,[11, 32] how to best model the specific complex interacting phenomena remains an open research question.
Modeling Strategies for the Primary Drying Step
Many models for primary drying are available in the literature (see the green column in Figure 2). The simplest strategy is to use a lumped capacity model,[22] which does not capture the effects of spatial gradients in the system. In both batch and suspended‐vial‐based continuous lyophilization, vials are heated from the bottom shelf, and hence the temperature gradient in the vertical direction is significant. A more common strategy is to model the drying process in one dimension (1D, vertical direction) assuming that the process is controlled by heat transfer only.[9, 33, 34, 35] By omitting mass transfer, the resulting model is simple and has only a few parameters, allowing the analytical solutions to be derived,[35] and so the model can be implemented easily. However, as sublimation is a simultaneous heat and mass transfer process, the aforementioned models become inaccurate when the process is controlled by mass transfer.
An approach to incorporating mass transfer into the model while avoiding any unnecessary complexity is to rely on the fact that sublimation occurs at the sublimation front/interface between the frozen and dried regions, and so mass transfer can be included as a boundary condition instead of writing a full continuity equation (e.g., see the simplified model of Ref. [19]). In this case, the driving force for mass transfer is dependent on the saturation (equilibrium) pressure at the sublimation interface, which is a function of temperature. Hence, the model should be able to accurately predict the spatial variation of the product temperature, including the interface temperature, and hence modeling the heat transfer in the vertical direction is needed. Moreover, one of the key considerations during the drying steps is to ensure that the product temperature does not exceed the upper limit (e.g., collapse temperature and glass transition temperature),[1] and thus spatially distributed temperature data are valuable for accurately determining the maximum temperature in the product.
There are models that consider detailed heat and mass transfer by including full energy and continuity equations, both in 1D[15, 16] and in higher dimensions.[17] Implementing such high‐fidelity models for practical applications, e.g., state estimation and control, is not easy due to their high complexity, computation time, and number of parameters.[4, 19] Besides, the accuracy of the complex models for primary drying is not significantly different from 1D or simplified models in most cases.[4] Consequently, these high‐fidelity models are not commonly used.
Note that, in primary drying, the water vapor is removed via both sublimation (frozen region) and desorption (dried region). Nevertheless, it is widely acknowledged that the amount of water vapor removed via sublimation is much higher than that of desorption, and so the effect of desorption can be omitted.[4, 16, 17, 19]
Modeling Strategies for the Secondary Drying Step
Secondary drying is similar to primary drying, with the liquid mainly removed via desorption instead of sublimation. Several modeling strategies are available, ranging from the simplest lumped capacity model[1] to the high‐fidelity model considering multidimensional heat and mass transfer in detail.[17] In Ref. [25], it was shown that the accuracy of 1D modeling is comparable to that of multidimensional modeling while being much less complicated, whereas a lumped capacity model could produce significant errors. Therefore, 1D modeling is preferable. Nevertheless, typical measurement techniques such as Karl Fischer titration measure the total amount of bound water, not the spatial variation. Consequently, a lumped capacity model is sometimes considered acceptable.
In primary drying, the drying rate is mainly governed by the rate of sublimation, which makes the modeling typically more straightforward than for secondary drying. In secondary drying, the two important mechanisms are 1) vapor phase transport through the porous dried product and 2) desorption of bound water from the solid surface of the dried product. Some previous models for secondary drying consider both phenomena,[14, 15, 16, 17] whereas the more recently published models tend to consider only the desorption part.[4, 23, 24, 25, 36] Simulation results in these studies show that the model prediction is highly accurate even when the vapor phase transport is omitted, suggesting that desorption is the actual limiting step. In Ref. [37], a detailed experimental study was conducted, concluding that desorption is the rate‐limiting step for mass transfer in secondary drying. Evidence from both simulation and experiment suggest that only the desorption part is necessary.
Although it is evident from both simulation and experiment in the literature that desorption is the limiting step, there is no systematic analysis from the theoretical perspective of transport phenomena. In Appendix , we provide a simple and systematic way of analyzing the effect/contribution of each transport process via scale analysis, which can be used to justify the contribution of each transport process for different systems/conditions other than those considered in this work and in the literature. A
Optimal Modeling Strategies
High‐quality mechanistic modeling should balance between the model accuracy and complexity such that the resulting model can provide reliable results and be practically implemented for different purposes with ease, e.g., optimization, state estimation, and model‐based control. High‐fidelity models should have the best accuracy in theory, but these models typically entail a large number of equations and parameters. Simulating these model equations in real time could be challenging. Besides, incomplete knowledge of those parameters and associated uncertainty could negatively impact the model accuracy instead of improving it. On the other hand, low‐fidelity models are much simpler to implement, but the model prediction might not be sufficiently accurate.
Our goal is to select modeling strategies that can capture the critical phenomena in lyophilization and produce sufficiently accurate results while keeping the model complexity, computational cost, and number of parameters at a minimum. The resulting models should be sufficiently accurate and efficient to be used for general process design (e.g., input/output design, heat/material balance, selecting operating conditions), process optimization, state estimation, and real‐time model‐based control (e.g., model predictive control). For detailed process and equipment design, a high‐fidelity model is needed, which is beyond the scope of this work.
From the discussion in Sections 3.1.1, 3.1.2, 3.1.3 and Appendix A, the selected modeling strategies are highlighted in Figure 2. The freezing model relies on the lumped capacity method that considers nucleation and supercooling. The primary drying model simulates heat transfer in 1D (vertical direction) with mass transfer incorporated as a boundary condition at the sublimation front. Finally, the secondary drying model captures heat transfer in 1D (vertical direction) and desorption of bound water. The models for continuous lyophilization developed in the subsequent sections are based on these strategies, with proper modifications for the suspended‐vial configuration. Sections 3.2, 3.3, and 3.4 describe the models for freezing, primary drying, and secondary drying, respectively. Additionally, to supplement the mechanistic understanding of the proposed models, Section 3.5 specifically discusses modeling strategies and theories underpinning convection and thermal radiation, the key heat transfer mechanisms in suspended vials.
Model for Freezing
For the design proposed by Ref. [7], suspended vials are cooled by using the cryogenic gas at a controlled temperature and flow rate. Besides, a dedicated chamber is added to control the nucleation temperature using the vacuum‐induced surface freezing (VISF) technology.[38] With this setup, all surfaces of a vial experience a similar heat transfer condition, which is different from batch lyophilization where only the bottom surface is cooled by the cooling shelf.
Our model (Figure 3A) for freezing of suspended vials is divided into five main steps: 1) preconditioning, 2) VISF, 3) nucleation, 4) solidification or ice formation, and 5) final cooling.

Schematic diagram showing the mechanistic modeling of continuous lyophilization via suspended vials for A) freezing, B) primary drying, and C) secondary drying.
Preconditioning
In this model, the preconditioning step starts at t0 and completes at tf1. Preconditioning entails cooling the product in a vial such that the product temperature is uniform at the target value below the freezing point (supercooling). In terms of modeling, this step is the simplest because there is no phase change and nucleation, and so only sensible heat is important.
The energy balance equation for the liquid solution in a vial is (1)(msCp,s+mwCp,w)dTdt=Qs1+Qs2+Qs3where T(t) is the temperature, t is time, m is the total mass, Cp is the specific heat capacity (per mass), Q is the total heat transfer between the vial surface and environment, the subscripts 'w' and 's' refer to the water (solvent) and solid (solute) phases, and the subscripts 's1', 's2', and 's3' denote the top, bottom, and side of the vial, respectively. The initial conditions for Equation (1) are (2)T(t0)=T0where T0 is the initial product temperature. During the freezing step in general, the amount of water changes with time due to phase transition, and so we denote mw, 0 as the initial mass of water at t0. On the other hand, the amount of solid does not change, meaning that ms is a constant. However, during the preconditioning step, there is no phase transition at all, so (3)mw(t0≤t≤tf1)=mw,0In some cases, experimental data are reported as the total liquid volume Vl and mass fraction of a solute xs, where the subscript 'l' denotes the liquid phase (solvent + solute). In such cases, ms and mw, 0 can be calculated from Vl and the densities ρs, ρw (see Appendix B for the relevant equations).
The next step is to define the expressions for Qs1, Qs2, and Qs3, which could vary among systems. Here, we start by writing general expressions and then simplify them to match our system of interest. In suspended vials, there exists thermal radiation between the vials, chamber walls, and heating/cooling shelves. Therefore, (4)Qs1=hs1Az(Tg−T)+σAzFs1(Tu4−T4)(5)Qs2=hs2Az(Tg−T)+σAzFs2(Tb4−T4)(6)Qs3=hs3Ar(Tg−T)+σArFs3(Tc4−T4)where h is the heat transfer coefficient, Az is the cross‐sectional area of the product, Ar is the side surface area of the product, σ is the Stefan‐Boltzmann constant, F is the transfer factor (see the definition in Section 3.5), and the subscripts 'u', 'b', 'c', and 'g' denote the upper surface of the chamber, bottom shelf, chamber walls, and cold gas, respectively. In this work, the vial/product is modeled as a cylinder of diameter d, and hence the cross sectional and surface area can be calculated from the given volume and diameter. In lyophilization, the bottom shelf and gas temperatures (Tb and Tg) typically vary with time and are specified by the freezing/drying protocol. The upper surface and wall temperatures (Tu and Tc), however, are not usually measured and thus can be estimated from data.[39] In this article, we assume that both temperatures are approximately constant as reported by Ref. [19, 40]. In addition, Tu ≈ Tc due to no additional heat source/sink at these locations. Nevertheless, our model is not restricted to these assumptions; i.e., temperature‐dependent data can be fed to the model (if available).
Next, Equations (4)–(6) are simplified further to match the experimental setup in Ref. [7], whose data are used for our model validation. In Ref. [7], the gas inside the chamber was cooled by the bottom shelf, and this cold gas was subsequently used to cool the vials, hence natural convection. In this setup, the upper surface and local gas in that area are not cooled, so the gas temperature is assumed to be equal to the surface temperature Tu. Consequently, the two terms can be combined and written in the form of Newton's law of cooling, with hs1 combining the effects of both thermal radiation and natural convection, which can be done by linearizing the fourth‐order term of the radiation part (see more details in Section 1.3.2 of Ref. [31] and Section 3.5). Similarly, the gas at the bottom surface is cooled by the bottom shelf, so we assume that both gas and bottom shelf have the same temperature Tg, with hs2 combining both radiation and convection. As a result, Qs1 and Qs2 are (7)Qs1=hs1Az(Tu−T)(8)Qs2=hs2Az(Tg−T)At the side surfaces, there are natural convection from the cold gas at Tg and thermal radiation from the chamber wall Tc, and so no simplification is needed for Equation (6).
Note that the expressions for Qs1, Qs2, and Qs3 are dependent on the system. Another design proposed by Ref. [7] is to flush the cryogenic gas directly into the chamber. In that case, the dominant heat transfer mode is forced convection, which is much stronger than thermal radiation in this low temperature region. Thus, the effect of thermal radiation might be omitted, simplifying Equations (4)–(6) even further.
Vacuum‐Induced Surface Freezing
At the end of the preconditioning step, VISF is initiated at tf1 and proceeds until its completion at tf2. The key idea of VISF is to reduce the total pressure to evaporate a small amount of liquid solution from the product, abruptly decreasing the temperature and promoting nucleation. An example of available models for VISF can be found in Ref. [41], which relies on the concept of the condensing/evaporating efficiency. A similar approach is used in this work, but the model is derived from the fundamental of heat and mass transfer during evaporation, e.g., as described in Ref. [31], and thus the associated parameters are the heat and mass transfer coefficients instead of the condensing/evaporating efficiency. In addition, the stochastic nature of ice nucleation is also incorporated into the VISF model (described later in Section 3.2.3), allowing for the comparison between spontaneous nucleation and VISF. First, consider the mass transfer part. The evaporation rate of water at the surface for a nonvolatile solute is (9)dmwdt=−hmAz(xw,sat−xw,c)where hm is the mass transfer coefficient, xw, sat is the mole fraction of water at the liquid‐vapor interface (equilibrium), and xw, c is the mole fraction of water in the chamber (environment). The subscripts 'sat' and 'c' here denote the equilibrium condition and environment, respectively. To calculate the mass fraction of water for Equation (9), we first assume that there are two gas/vapor components during VISF, namely 1) water and 2) nitrogen or inert gas, denoted by the subscript 'in'. By assuming the ideal gas law, (10)xw,sat=pw,satMwpw,satMw+(pt−pw,sat)Min(11)xw,c=pw,cMwpw,cMw+(pt−pw,c)Minwhere pt is the total pressure, pw is the partial pressure of water, and M is the molar mass. If the environment contains only nitrogen or inert gas, pw, c = 0. The saturation pressure pw, sat is a function of temperature, that is,[42](12)pw,sat=103exp16.3872−3885.7T−42.98Note that, if the VISF process is carried out properly, the amount of water that vaporizes is usually very small and thus does not significantly impact the overall thermophysical properties.
Next, consider the heat transfer part. The energy balance equation can be modified from Equation (1) as (13)(msCp,s+mwCp,w)dTdt=Qs1+Qs2+Qs3+ΔHvapdmwdtwhere the last term on the right‐hand side is the amount of heat removed via evaporation and ΔHvap is the heat of vaporization, which can be approximated by Ref. [42] (14)ΔHvap=2.257×1061−T/647.11−373.15/647.10.38In Equation (13), mw(t) is time‐dependent due to evaporation, which also means that the side surface area Ar changes with time.
The initial conditions for Equations () and () are the final mass of water and temperature at the end of the preconditioning step. 9 13
Nucleation
The nucleation step starts at the end of VISF (tf2) for controlled nucleation or at the end of the preconditioning step (tf1) for uncontrolled nucleation, and then completes at tf3. Our modeling strategy for the nucleation step described below is based on the state‐of‐the‐art freezing model proposed by Ref. [12]. In this work, we use the term nucleation to denote the first nucleation where the temperature of supercooled liquid almost instantaneously increases to the equilibrium/freezing point, which is caused by the heat released from the fraction of liquid being frozen/solidified. On the other hand, we use the term solidification to denote the phase transition from liquid to solid (ice formation) after that first nucleation.
First, consider the case of controlled nucleation with VISF. The energy balance during nucleation, assuming the process is instantaneous and adiabatic, is (15)(Tf,l−Tn)(msCp,s+mwCp,w)=mi,nΔHfuswhere Tf, l is the freezing point of the liquid solution, i.e., the product temperature after nucleation, Tn is the nucleation temperature, i.e., the product temperature when nucleation starts, mi, n is the mass of ice formed immediately after nucleation, the subscript 'i' denotes the solid phase (ice), and ΔHfus is the heat of fusion. With the presence of a non‐volatile solute, the freezing‐point depression is (16)Tf,w−Tf,l=KfMsmsmw−mi,nwhere Tf,w is the freezing point of pure water, Kf is the molal freezing‐point depression constant, and Ms is the molar mass of a solute. The two unknowns Tf,l and mi,n can be obtained by solving Equations (15) and (16) simultaneously.
Finally, define tf3 as the time when the nucleation process completes. Since the nucleation process is nearly instantaneous as explained by Ref. [12], tf3 is set to tf2, with the relations (17)mw(tf3)=mw(tf2)−mi,n(18)mi(tf2)=0(19)mi(tf3)=mi,n(20)T(tf2)=Tn(21)T(tf3)=Tf,l
For the case of stochastic nucleation, the entire calculation described for VISF in Section 3.2.2 is skipped. By nature, ice nucleation is stochastic and can be interpreted as a Poisson process. The rate constant of the Poison process λ is (22)λ=kn(Tf,l−T)bnVlwhere kn and bn are the nucleation kinetics parameters. Before nucleation occurs, there is no ice in the system, and hence Tf,l can be calculated by(23)Tf,w−Tf,l=KfmsMsmwThe probability that the first nucleus is formed between time t and t + Δt is expressed by (24)P=1−exp(λΔt)The probability defined by Equation (24) is calculated cumulatively at every time step Δt until the first nucleation occurs, which is marked as the end of the preconditioning step tf1. Subsequently, follow the exact same procedure described by Equations (15)–(21), with tf1 replacing tf2.
Solidification
After the first nucleation completes, the solidification (aka ice formation) step starts at tf3. For solidification, the lumped capacity model was shown to provide accurate prediction of the temperature and freezing time for typical vial sizes;[12] we also discuss this in the context of the Biot number in Appendix A. The lumped capacity model is sufficiently accurate and highly computationally efficient, but it does not represent the correct physics of ice formation. By treating the entire solid/liquid as a lumped object during solidification, it implies that homogeneous nucleation is assumed. Nevertheless, it is commonly known that heterogeneous nucleation is a more frequently observed phenomenon during ice formation.[43] Consequently, the solidification process generally starts from the vial surfaces, i.e., the outer and bottom surfaces in this case. To take this fact into account, a rigorous 2D heat transfer model could be considered.[13] In such cases, the physics is incorporated more accurately, but the major drawback of 2D modeling is its high computational cost and numerical complexity.
Our strategy here is to combine the advantages of the lumped capacity and 2D models together, resulting in a model that is computationally efficient, provides accurate prediction, and represents the correct physics; we denote it as a hybrid lumped capacity model. In this case, ice formation is assumed to initiate from the side and bottom surfaces (similar to a 2D model), in which the ice layer is treated as an additional heat transfer resistance between the cold gas and unfrozen water. Additionally, heat conduction in the ice layer is assumed to be quasi steady, which is a reasonable assumption for problems associated with phase change in general as the sensible heat is much smaller than the latent heat.[31] Physically, this is equivalent to assuming that all the heat input is used for phase transition only. The unfrozen water and solute are treated as a lumped object as its temperature follows the equilibrium temperature. A schematic diagram showing our model for the solidification step is shown in Figure 4.
The energy balance during the solidification step is (25)(msCp,s+mwCp,w)dTdt=Qs1+Qs2+Qs3+ΔHfusdmidtwith Qs1, Qs2, and Qs3 as defined in Equations (7), (8), and (6), respectively. During the solidification step, the amount of water mw(t) and ice mi(t) varies with time, which also affects the volume and surface area of the product. The relation between mw and mi is (26)mw=mw(tf3)−miThe temperature of the liquid phase and the solid–liquid interface follows the freezing‐point depression relation (27)T=Tf,w−KfMsmsmwThe ice layer becomes an additional heat transfer resistance, and so the heat transfer coefficients hs2 and hs3 in Equations (8) and (6) can be replaced by the overall heat transfer coefficients (28)Us2=11/hs2+l/ki(29)Us3=11/hs3+roln(ro/r)kiwhere ro, r, and l are as defined in Figure 4 and ki is the thermal conductivity of ice. For the radiation part, the linearization technique described in Section 3.2.1 can be applied, and so the equation is written in the form of Newton's law of cooling. Note that the overall heat transfer coefficients in Equations (28) and (29) are defined based on the outer surface area to be consistent with the original expressions of Qs2 and Qs3.
The initial conditions for mw, mi, and T are the final conditions of the nucleation step, namely Equations (17), (19), and (21). Finally, define tf4 as the time when solidification completes. The criterion for complete solidification is defined as (30)mi(tf4)=0.95mw(tf3)where the coefficient could vary between 0.85 and 0.95 without significantly changing the final results.[12]
Our hybrid lumped capacity model presented in this section has the same model complexity and computational cost as those of the original lumped capacity model (e.g., in Ref. [12]) while describing the physics in a more accurate way as in the 2D model (e.g., in Ref. [13]). Final simulations results from these models are almost identical for lyophilization of unit doses, and so there is no concern in terms of model accuracy.

Schematic diagram showing the mechanistic modeling of the solidification step. For simplification, it is assumed that the liquid part retains a cylindrical shape with the same aspect ratio as the initial solution before nucleation starts.
Cooling
The final step is to ensure that the product temperature is at the desire value before starting the drying process. This cooling step starts at tf4 and completes at tf5. The energy balance is (31)(msCp,s+mwCp,w+miCp,i)dTdt=Qs1+Qs2+Qs3with Qs1, Qs2, and Qs3 as defined in Equations (7), (8), and (6), respectively. Since there is no phase change during this step, the amount of substances, volume, and surface area are all constant, following the final conditions of the solidification step. The initial condition for Equation (31) is the final temperature of the solidification step. It is generally known that, after solidification, the amount of bound water is negligible compared to that of ice, and so mwCp,w could be omitted from Equation (31) without any significant error.
By consecutively simulating the models developed in Sections –, the evolution of the product temperature, phase transition, and amount of ice/water during the freezing step can be predicted. 3.2.1 3.2.5
Model for Primary Drying
In conventional lyophilization, vials are placed on the heating shelf, and thus heat transfer at the bottom surface is driven by conduction (at the point of contact), convection (gas), and radiation, whereas only radiation dominates at the side and top surfaces.[18] For continuous lyophilization, suspended vials are heated by the below heating shelf without any contact between the vials and shelf. As a result, heat transfer at the bottom surface is driven only by thermal radiation and natural convection.
The model for primary drying is formulated in the rectangular coordinate system with one spatial dimension (z) and time (t) (Figure 3B). Define the primary drying step to start at t0 and complete at td1. If the primary drying model is simulated consecutively after the freezing step, then set t0 = tf4. Otherwise, t0 should be set to 0 for a standalone primary drying simulation.
The governing equations for the primary drying step consist of the Equation (1) energy balance in the frozen region and Equation (2) mass balance at the sublimation front. By assuming that the supplied heat is used in the frozen region only, the energy balance for the frozen region can be described by the partial differential equation (PDE) (32)ρfCp,f∂T∂t=kf∂2T∂z2+QradVf,S<z<Hwhere T(z, t) is the temperature, S(t) is the sublimation front/interface position, k is the thermal conductivity, ρ is the density, Cp is the heat capacity, V is the volume, H is the height of the product, and the subscript 'f' denotes the frozen region. We refer to Appendix B for the calculations of some relevant parameters. The radiative heat transfer from the sidewall Qrad is(33)Qrad=σArFs3Tc4−T4where Tc is the chamber wall temperature and Ar = πdH is the side area of the product. We refer to Section 3.5 for the detailed derivation of Equation (33). The mass balance of water at the sublimation front gives(34)dSdt=Nwρf−ρewhere Nw is the sublimation flux and ρe is the effective density of the dried region above the sublimation front. The driving force for mass transfer at the sublimation interface is[1, 18, 22](35)Nw=pw,sat−pw,cRpwhere pw,sat is the saturation/equilibrium pressure of water, pw,c is the partial pressure of water in the chamber (environment), and Rp is the mass transfer resistance. The saturation pressure for sublimation is described by Ref. [22](36)pw,sat=exp−6139.9T+28.8912The variation of the mass transfer resistance can be approximated by the empirical expression[4, 18, 22](37)Rp=Rp0+Rp1SRp2+Swhere Rp0, Rp1, and Rp2 are the constants to be estimated from data. Physically, Rp0 represents the resistance associated with mass convection above the product, which could include the presence of a skin layer on the cake surface and the effect of the stopper,[44] whereas Rp1SRp2+S corresponds to the resistance associated with diffusion through the porous dried layer in the product.
Modeling the heat transfer and sublimation front in one dimension, as described in Equations () and (), implies an assumption that the sublimation front is flat. This assumption has been widely used for conventional lyophilization as the heat flux through the bottom of the vial is much stronger than that from the sidewall, mainly due to heat conduction. In lyophilization of suspended vials, due to the absence of conductive heat transfer at the bottom surface, the sidewall heat flux becomes more comparable to the bottom heat flux. However, the bottom heat flux still dominates for two key reasons. First, the bottom shelf remains the primary heat source in the system, which directly interacts with the bottom surface of the vial through thermal radiation and convection. Second, since most vials are surrounded by others at similar temperatures, the driving force for sidewall heat transfer is significantly weaker than that for bottom heat transfer. A systematic analysis for comparing different heat transfer modes can be done using relevant dimensionless numbers, e.g., in Appendix . 32 34 A
The PDE represented by Equation (32) requires two boundary conditions. Heat transfer at the bottom surface of the frozen product follows Newton's law of cooling, (38)−kf∂T∂z=hb(T−Tb),z=Hwhere Tb is the bottom shelf temperature and hb is the overall heat transfer coefficient that combines the effects of thermal radiation and natural convection. At the top surface, the energy balance associated with sublimation and thermal radiation from the upper surface of the chamber is (39)NwΔHsub=kf∂T∂z+σFs1Tu4−T4,z=Swhere ΔHsub is the heat of sublimation.
The initial conditions for Equations (32) and (34) are (40)T(z,t0)=T0,0≤z≤H(41)S(t0)=0For consecutive simulation with the freezing step, set T0 = T(tf4). Otherwise, T0 can be set arbitrarily for a standalone primary drying simulation.
The primary drying model is simulated until the interface position is equal to the height of the product, i.e., S = H, indicating that there is no frozen material left, which marks the end of the primary drying step at td1. In some cases, there might be an additional heating period at the end of primary drying to adjust the temperature and ensure complete sublimation before starting the secondary drying step. However, the model contains only a simple heat equation, and so it is not detailed here.
Model for Secondary Drying
The model for secondary drying is formulated in the rectangular coordinate system with one spatial dimension (z) and time (t) (Figure 3C), which is consistent with the primary drying model. The secondary drying step is defined to start at t0 and complete at td2. If the secondary drying model is simulated consecutively after the primary drying step, then set t0 = td2. Otherwise, t0 should be set to 0 for a standalone secondary drying simulation.
The governing equations for the secondary drying step comprise the 1) energy balance in the dried region and 2) desorption kinetics. The energy balance of the dried product is (42)ρeCp,e∂T∂t=ke∂2T∂z2+ρdΔHdes∂cw∂t+QradVe,0≤z≤Hwhere T(z, t) is the product temperature, cw(z, t) is the concentration of bound water (aka moisture content, residual moisture, residual water), ρd is the density of the dried region (solid and vacuum), ΔHdes is the heat of desorption, Qrad is as defined in Equation (33), and the other parameters are as defined in Equation (32), with the subscript 'e' denoting the effective properties considering both solid and gas in the pores. The desorption kinetics of bound water is described by (43)∂cw∂t=kd(cw∗−cw)where cw∗ is the equilibrium concentration of bound water and kd is the rate constant for desorption that exhibits Arrhenius temperature dependence[4, 15, 16](44)kd=fae−Ea/RTwhere fa is the frequency factor (aka collision frequency), Ea is the activation energy, and R is the gas constant. The above desorption kinetics, Equation (43), is known as the linear driving force model, one of the simplest adsorption/desorption models that can accurately predict the dynamics of bound water and has been widely used in the literature.[4, 15, 19, 23, 45] Further simplification that is relatively common can be done by setting cw∗=0. This simplification produces insignificant error as shown in Ref. [16] and eliminates the need for equilibrium data and detailed knowledge about the solid structure.[4]
The governing PDE, Equation (42), requires two boundary conditions. The bottom surface of the dried product is heated by the heating shelf, which follows Newton's law of cooling (45)−ke∂T∂z=hb(T−Tb),z=Hwhere the value of hb is approximated to have the same value as that used in primary drying, Equation (38). Heat transfer at the top surface is mainly thermal radiation, resulting in the boundary condition (46)−ke∂T∂z=σFs1Tu4−T4,z=0
The initial conditions for Equations (42) and (43) are (47)T(z,t0)=T0,0≤z≤H(48)cw(z,t0)=cw,0,0≤z≤HFor consecutive simulation with the primary drying step, set T0 = T(z,td1). Otherwise, T0 can be set arbitrarily for a standalone secondary drying simulation.
The secondary drying model should be simulated until the concentration of bound water is below the target value, denoted as cw,∞, which marks the end of the secondary drying step at td2.
Modeling Heat Transfer in Suspended Vials
Convection and radiation are the two important modes of heat transfer in suspended, vials as discussed extensively in the previous sections. During the freezing step, there could be a combination of natural/forced convection and radiation, depending on how the cryogenic gas is fed to the system. In primary and secondary drying, only natural convection and radiation are important.
Convection can be simply modeled using Newton's law of cooling. Heat transfer coefficients for convection can be estimated from correlations that entail dimensionless groups such as the Nusselt number, Prandtl number, Reynolds number (forced convection), and Grasholf number (natural convection). Nevertheless, it is more common and accurate to estimate the heat transfer coefficient from data, e.g., using the techniques suggested in Ref. [4].
Thermal radiation is significantly more complicated in terms of modeling. The theories and model equations described below are mainly based on in Ref. [31] and; Ref. [39] the former discusses general thermal radiation theories, while the latter provides a detailed study on the modeling of thermal radiation in lyophilization. Here we summarize only the key elements needed for modeling thermal radiation in the suspended‐vial configuration; more detailed discussion can be found in the aforementioned references. Consider radiation exchange between two diffuse, gray surfaces of finite size denoted as surfaces 1 and 2, respectively. In general, the net radiant energy receiving by surface 1 can be written as (49)Qrad=σA1FT24−T14where A is the surface area, F is the transfer factor, and the subscripts '1' and '2' denote surfaces 1 and 2, respectively. The transfer factor is dependent on the geometry and material properties (emissivity) of both surfaces. For any two diffuse, gray surfaces that form an enclosure, (50)Qrad=σT24−T141−ε1ε1A1+1A1F1−2+1−ε2ε2A2where F1−2 is the view/shape factor. If surface 1 is surrounded by surface 2 (i.e., F1−2 = 1) and surface 2 is much larger than surface 1, Equation (50) can be simplified as(51)Qrad=ε1σA1T24−T14In Equation (51), the transfer factor F=ε1. Next, consider the case where a single vial (surface 1) is surrounded by the chamber walls (surface 2). In this case, Equation (51) becomes (52)Qrad=εglσArTc4−T4where εgl is the emissivity of the glass vial. Here the transfer factor F=εgl. The amount of radiative heat for the single‐vial case represented by Equation (52) defines the upper bound on the radiative heat that one vial can receive from the chamber walls. This is because, when there are multiple vials, the view factor F1−2 is less than 1, and so the radiative heat is shared among the vials. As a result, the transfer factor F for the multiple‐vial case must be less than εgl. Therefore, Equation (52) needs to be modified to account for interactions between vials.
Typical lyophilization of unit doses always consists of a large number of vials, and so thermal radiation exchange exists not only between vials and chamber walls but also between those multiple vials. In batch lyophilization, vials are arranged as an array consisting of many rows, which results in significant differences in heat transfer conditions between the outer and inner vials. In such cases, the outer vials with higher temperature transfer significant heat to the inner vials while simultaneously exchanging heat with the chamber walls. A rigorous way of modeling this complicated radiation is the radiation network approach, which is comprehensively discussed and demonstrated in the context of lyophilization in Ref. [39]. In the suspended‐vial configuration, however, vials are typically aligned in a few rows, e.g., a single row in the equipment proposed by Ref. [7]. As a result, all vials experience nearly the same heat transfer heat condition, resulting in negligible heat transfer between vials. Therefore, instead of using the radiation network approach, we modify Equation (52) to follow Equation (49) as(53)Qrad=σArFTc4−T4where F must be less than εgl as described in the previous paragraph. This transfer factor F is best to be estimated from experimental data but can also be approximated mechanistically, e.g., using Equation (50). In our model, the transfer factor Fs3 appears in Equations (6), (32), and (42). If the chamber design and vial configuration are identical for both freezing and drying steps, the same value of Fs3 can be used for all equations. A similar analysis can also be done for Fs1 in Equations (39) and (46).
When there exists both convection and radiation, it is more convenient to linearize and rewrite the radiation part in the form of Newton's law of cooling; at the temperature of about 300 K, the error caused by linearization is about 0.1% for the temperature difference of 20 K and 2% for the temperature difference of 100 K (see Section 1.3.2 of Ref. [31]), which is tiny. The linearized equation can then be combined with the convection part, with the corresponding heat transfer coefficient taking into account of both convection and radiation, e.g., Equations (8), (38), and (45). This approximation helps simplify the equations and also facilitates the use of an overall heat transfer coefficient (e.g., Equation (29)) as both convection and radiation parts are written in the form of Newton's law of cooling.
Finally, to ensure physically reasonable heat transfer parameters in our model, we note that typical heat transfer coefficients for natural convection in air vary between 3 and 25 W·m−2·K−1, and those for forced convection vary between 10 and 200 W·m−2·K−1.[31]
Default Model Parameters
This section defines the default parameter values for the model developed in Sections 3.2, 3.3, and 3.4. These parameter values are either obtained from the literature or set based on the typical values used in lyophilization. This default set of parameters assumes a complete simulation in which the models for freezing (with controlled nucleation), primary drying, and secondary drying are simulated consecutively. Table 1 lists the default model parameters; parameter values different from those reported in the table are stated explicitly in each section or case study.
The parameters that should be estimated from experimental data include heat transfer coefficients, mass transfer coefficients and cake resistance, and desorption‐related parameters (frequency factor and activation energy). Operating conditions that are not measured, e.g., wall temperatures, could also be estimated from data.
| Symbol | Value | Unit | Source |
|---|---|---|---|
| Thermophysical properties | |||
| C,ep | 2590 | J·kgK−1 | [ ] [72090] |
| C,fp | 2163 | JkgK−1 | calculated (see Appendix ) B |
| C,ip | 2108 | J kg·K−1 | [ ] [72090] |
| C,sp | 1204 | J kg·K−1 | [ ] [72090] |
| C,wp | 4.187 | J kg·K−1 | [ ] [72090] |
| ΔHdes | 2.68×106 | J kg−1 | [ ] [72090] |
| ΔHfus | 3.34× 105 | J kg−1 | [ ] [72090] |
| ΔHsub | 2.84×106 | J kg−1 | [ ] [72090] |
| ΔHvap | see Equation () 14 | J kg−1 | [ ] [72090] |
| ke | 0.217 | W m·K−1−1 | [ ] [72090] |
| kf | 2.07 | W m·K−1−1 | calculated (see Appendix ) B |
| ki | 2.25 | W m·K−1−1 | [ ] [72090] |
| ks | 0.126 | Wm·K−1−1 | [ ] [72090] |
| kw | 0.598 | W m·K−1−1 | [ ] [72090] |
| ρe | 215 | kgm−3 | [ ] [72090] |
| ρd | 212.21 | kg m−3 | [ ] [72090] |
| ρf | 937 | kg m−3 | calculated (see Appendix ) B |
| ρi | 917 | kg m−3 | [ ] [72090] |
| ρs | 1587.9 | kg m−3 | [ ] [72090] |
| ρw | 1000 | kgm−3 | [ ] [72090] |
| Operating conditions | |||
| cw,0 | 0.088 | kg water/kg solid | [ ] [72090] |
| cw,∞ | 0.01 | kg water/kg solid | [ ] [72090] |
| pt | 10(freezing)5 | Pa | — |
| 10(VISF)4 | Pa | — | |
| pw,c | 3 | Pa | [ ] [72090] |
| pw,sat | see Equations () and () 12 36 | Pa | , [ ] [72090] [72090] |
| T0 | 298.15 | K | — |
| Tb | 270 (primary drying) | K | — |
| 295 (secondary drying) | K | — | |
| ,TTcu | 273 (before VISF) | K | — |
| 240 (after VISF) | K | — | |
| 265 (primary drying) | K | — | |
| 290 (secondary drying) | K | — | |
| Tf,w | 273.15 | K | [ ] [72090] |
| Tg | 268 (before VISF) | K | — |
| 230 (after VISF) | K | — | |
| Tn | 268 | K | — |
| Heat and mass transfer | |||
| F s 1 | 0.8 | — | — |
| F s 3 | 0.624 | — | — |
| fa | 1.5×10−3 | 1s−1 | — |
| Ea | 6500 | Jmol·K−1−1 | — |
| hb | 15 | Wm·K−2−1 | — |
| hm | 6.34×10−3 | kgm·s−2−1 | [ ] [72090] |
| hs1 | 5 | Wm·K−2−1 | — |
| hs2 | 10 | Wm·K−2−1 | — |
| hs3 | 8 | Wm·K−2−1 | — |
| Rp0 | 1.5×104 | ms−1 | — |
| Rp1 | 3.0×107 | 1s−1 | — |
| Rp2 | 10 | m−1 | — |
| σ | 5.67× 10−8 | Wm·K4−2− | — |
| Product and formulation | |||
| H | 7.2× 10−3 | m | calculated (see Appendix ) B |
| ms | 1.53× 10−4 | kg | calculated (see Appendix ) B |
| mw,0 | 2.9× 10−3 | kg | calculated (see Appendix ) B |
| Vl | 3× 10−6 | m3 | [ ] [72090] |
| xs | 0.05 | — | [ ] [72090] |
| Vial | |||
| d | 0.024 | m | 10R vial |
| ϵgl | 0.8 | — | [ ] [72090] |
| Others | |||
| Kf | 1.86 | kg·Kmol−1 | [ ] [72090] |
| Min | 0.028 | kgmol−1 | [ ] [72090] |
| Ms | 0.3423 | kgmol−1 | [ ] [72090] |
| Mw | 0.018 | kgmol−1 | [ ] [72090] |
| R | 8.314 | Jmol·K−1−1 | [ ] [72090] |
Numerical Methods
This section comprehensively describes the numerical techniques required for solving the model equations efficiently. For the freezing model, since the lumped capacity approximation is used, the resulting equations are ordinary differential equations (ODEs). In Ref. [12, 13], the ODEs were solved numerically using an explicit scheme with fixed time steps. The probability of nucleation (Equation (24)) was calculated at every time step in a discrete fashion. From the computational perspective, this strategy is not the most efficient approach as it requires small step size to ensure stability. In this work, we rely on an implicit method with adaptive time steps; MATLAB's ode15s is selected. Nevertheless, since Equation (24) is an algebraic equation that depends on the time step Δt, solving an ODE system coupled with Equation (24) requires fixing Δt via a predefined time span and then running the solver repeatedly and sequentially for each time step, with the probability of nucleation calculated at the end of each run, until the first nucleation is detected. A more efficient strategy is to consider a continuous version of Equation (24), which is (54)P=1−exp∫t0t−λdtwhere t0 is the initial time and P(t = t0) = 0. Differentiate Equation (54) results in (55)dPdt=λ(1−P)The resulting ODE, Equation (55), can now be coupled with a system of ODEs describing heat and mass transfer in the process (e.g., during preconditioning and VISF), which can then be integrated using the selected ODE solver. In MATLAB, the Event function can be used to detect the time of first nucleation, i.e., when the probability exceeds the given value. With this strategy, our freezing model can be integrated continuously in a single run (i.e., without running the solver repeatedly). Consequently, the model equations can be solved within 0.1 s on a normal laptop, which is highly efficient.
For the PDEs in the primary drying and secondary drying models, the method of lines[47] is recommended. The method of lines consists of two steps. First, the PDEs are discretized spatially to produce a system of ODEs. Second, the resulting ODEs are integrated with a proper ODE solver (MATLAB's ode15s in this work). For the primary drying model, first consider Equation (32). As the equation involves a moving interface S(t), define a new variable (56)ξ=z−SH−Swhere ξ is the dimensionless position with respect to the moving interface (aka sublimation front). This dimensionless position varies from 0 to 1, in which ξ = 0 at z = S and ξ = 1 at z = H. Consequently, Equations (32), (38) and (39) become (57)ρfCp,f∂T∂t=kf(H−S)2∂2T∂ξ2−ρfCp,f(ξ−1)H−SdSdt∂T∂ξ+QradVf,0<ξ<1(58)−kfH−S∂T∂ξ=hb(T−Tb),ξ=1(59)NwΔHsub=kfH−S∂T∂ξ+σFs1(Tu4−T4),ξ=0To spatially discretize the PDE, define (60)Δξ=1nz−1(61)ξ=(j−1)Δξwhere nz is the number of grid points, Δξ is the distance between each grid point, and j is the integer index for discretization, in which j = 1 at z = S and j = nz at z = H. Discretizing Equations (57)–(59) using the second‐order finite difference scheme results in (62)dTjdt=kfρfCp,f(H−S)2Tj+1−2Tj+Tj−1Δξ2−jΔξ−1H−SdSdtTj+1−Tj−12Δξ+QradρfCp,fVfj=1,2,⋯,nz,(63)−kfH−STj+1−Tj−12Δξ=hb(Tj−Tb),j=nz(64)NwΔHsub=kfH−STj+1−Tj−12Δξ+σFs1Tu4−Tj4,j=1where Tj is the product temperature at position j. The ghost point at j = nz + 1 in Equation (63) can be eliminated by substituting Tj=nz+1 into Equation (62) for j = nz. Similarly, Tj = 0 in Equation (64) can be eliminated by substituting Tj = 0 into Equation (62) for j = 1. The above nondimensionalization and discretization techniques result in a system of nonlinear ODEs defined on a moving‐grid system.
Numerical treatment for the secondary drying model is simpler than those described for the primary drying model as there is no moving interface. Define (65)Δz=Hnz−1(66)z=(j−1)Δzwhere Δz is the distance between each grid point, j = 1 at z = 0, and j = nz at z = H. Discretizing Equations (42), (43), (45), and (46) using the second‐order finite difference scheme results in (67)dTjdt=keρeCp,eTj+1−2Tj+Tj−1Δz2+ρdΔHdesρeCp,edcw,jdt+QradρeCp,eVej=1,2,⋯,nz,(68)dcw,jdt=−fae−Ea/RTjcw,j,j=1,2,⋯,nz(69)−keTj+1−Tj−12Δz=hb(Tj−Tb),j=nz(70)−keTj+1−Tj−12Δz=σFs1Tu4−Tj4,j=1where the ghost points can be treated similarly as done for the primary drying model.
All simulations, calculations, and results presented in this article were performed and generated using MATLAB R2023a. With the aforementioned numerical methods, our model can be simulated accurately within 1 s on a normal laptop. The model, data, and MATLAB code used in this work are made available (see the Data Availability section).
Results and Discussion
Model validation
The mechanistic model presented in Section 3 is validated using the experimental data reported in Ref. [7]. Our model validation is carried out for each lyophilization step separately, with the specific parameters reported in Table 2.
For the freezing step, the simulated temperature and freezing time agree well with the experimental data (Figure 5A). The product temperature decreases from its initial value of 280 K to the nucleation temperature of about 263 K, where nucleation starts. Upon the first nucleation, the temperature instantaneously rises up from 263 K to the freezing point of about 272 K. The temperature slowly decreases during the solidification phase for about 30 min, following the freezing‐point depression. Subsequently, the temperature decreases faster and reaches equilibrium with the environment (chamber wall and cryogenic gas), with the simulated temperature approaching the equilibrium slightly faster than the actual temperature.
The model accurately predicts the evolution of the product temperature and drying time during primary drying for both low (263 K) and high (313 K) shelf temperatures (Figure 5B). The temperature rises up rapidly at the beginning and gradually increases at a slower rate toward the end of the process. This is because the driving force for sublimation is initially low, and so most of the heat input is used to increase the temperature. As time progresses, the driving force for sublimation is larger; thus, most of the heat input is used for sublimation. The maximum error in temperature prediction is about 2–3 K, while the error in drying time prediction is about 0.2 h for Case 2a and 0.4 h for Case 2b (≈6%). This error could be partly because of the uncertainty in cake resistance, which results from the stochastic nature of the freezing process. The datasets in Figure 5B, which represent the lower and upper limits of the operating boundaries, demonstrate the validity and generalizability of the model across the full range of operating conditions.
Similar to primary drying, in secondary drying, we consider two different concentration levels for the bound water (residual moisture): 0.088 and 0.075 kg water/kg solid. The simulated concentration of bound water closely aligns with the experimental data for both concentration levels (Figure 5C). The concentration decreases exponentially from its initial value to the final concentration of 0.01 kg water/kg solid, the threshold set for terminating the simulations. This concentration profile is expected given the linear driving force model is used to describe the desorption process. It is important to note that the data used in Figure 5C are based on the shelf temperature of 293 K. To rigorously estimate the values of fa and Ea, it is recommended to obtain the concentration profiles at various shelf temperatures so that the effects of temperature on the desorption process can be quantified.
Overall, our model is able to accurately predict the time evolution of the critical process parameters for all three steps of lyophilization. The maximum deviation between the predicted and measured temperature is about 3 K, which is about 1% compared to the absolute operating temperature used in lyophilization. This error is smaller than the measurement noise of some non‐invasive temperature sensors, e.g., thermal imaging cameras[35] For the concentration of bound water, the maximum error is less than 0.01 kg water/kg solid, which is typically the threshold for identifying the endpoint of secondary drying[1] Therefore, the accuracy of our model is sufficient for general process design, optimization, and control.
We note that, in the suspended‐vial lyophilization considered in this article, every single vial moves through the process following the same trajectory as shown in Figure 1B, ensuring identical heat transfer conditions as a function of time for all vials. For batch lyophilization designs where the vials are distributed in different locations (Figure 1A), the evolution of the critical process parameters in each vial also varies. For instance, the outermost vials in a batch lyophilizer dry the fastest due to thermal radiation from the environment, while the thermal radiation effect is much weaker on the inner vials.[39]
![Click to view full size Model validation for the lyophilization of suspended vials using the experimental data from.Panel A shows the model prediction and experimental data for the product temperature during the freezing step. Panel B shows the model prediction and experimental data for the product temperature (assumed to be measured at the bottom surface) during the primary drying step. The maximum shelf temperatures for Cases 2a and 2b are 263 and 313 K, respectively. Panel C shows the model prediction and experimental data for the average concentration of bound water during the secondary drying step. The initial concentrations for Cases 3a and 3b are 0.088 and 0.075 kg water/kg solid, respectively. [ ] [72090]](https://europepmc.org/articles/PMC12713072/bin/ADVS-12-e11693-g005.jpg)
Model validation for the lyophilization of suspended vials using the experimental data from.Panel A shows the model prediction and experimental data for the product temperature during the freezing step. Panel B shows the model prediction and experimental data for the product temperature (assumed to be measured at the bottom surface) during the primary drying step. The maximum shelf temperatures for Cases 2a and 2b are 263 and 313 K, respectively. Panel C shows the model prediction and experimental data for the average concentration of bound water during the secondary drying step. The initial concentrations for Cases 3a and 3b are 0.088 and 0.075 kg water/kg solid, respectively. [ ] [72090]
| Symbol | Value | Unit | Source |
|---|---|---|---|
| Freezing (no VISF) | |||
| T0 | 280 | K | [ ] [72090] |
| ,TTcu | 272 | K | estimated from data in Ref. [] [7] |
| Tg | see Figure 5A | K | [ ] [72090] |
| Tn | 263.18 | K | [ ] [72090] |
| hs1 | 7 | Wm·K−2−1 | estimated from data in Ref. [] [7] |
| hs2 | 18 | Wm·K−2−1 | estimated from data in Ref. [] [7] |
| hs3 | 15 | Wm·K−2−1 | estimated from data in Ref. [] [7] |
| Primary drying | |||
| T0 | 231 (Case 2a) | K | [ ] [72090] |
| 235 (Case 2b) | K | [ ] [72090] | |
| Tb | 263 (Case 2a) | K | [ ] [72090] |
| 313 (Case 2b) | K | [ ] [72090] | |
| ,TTcu | 275 | K | estimated from data in Ref. [] [7] |
| hb | 16 | Wm·K−2−1 | estimated from data in Ref. [] [7] |
| Rp1 | 3.4× 107 | 1s−1 | estimated from data in Ref. [] [7] |
| Rp2 | 1 | 1m−1 | estimated from data in Ref. [] [7] |
| Secondary drying | |||
| cw, 0 | 0.088 (Case 3a) | kg water/kg solid | [ ] [72090] |
| 0.075 (Case 3b) | kg water/kg solid | [ ] [72090] | |
| T0 | 273 | K | [ ] [72090] |
| Tb | 293 | K | [ ] [72090] |
| ,TTcu | 285 | K | estimated from data in Ref. [] [7] |
| fa | 0.42 | 1s−1 | estimated from data in Ref. [] [7] |
| Ea | 2.05× 104 | Jmol·K−1−1 | estimated from data in Ref. [] [7] |
| hb | 16 | Wm·K−2−1 | estimated from data in Ref. [] [7] |
| Vl | 2× 10−6 | m3 | [ ] [72090] |
Simulation of a Complete Lyophilization Cycle
One of the important aspects of continuous manufacturing is to ensure that the process is operated smoothly, optimally, and safely without human intervention, to minimize downtime and maximize production. In the context of continuous lyophilization, our model can be used to study the evolution of critical process parameters – e.g., temperature, moisture content – throughout the process at various operating conditions, which can help guide process design and optimization.
This work not only presents the first mechanistic model for continuous lyophilization of suspended vials, but also is one of the very few studies that develops a complete model incorporating all three steps of lyophilization, including freezing, primary drying, and secondary drying. This is important specifically for continuous manufacturing where the entire process should be designed and optimized simultaneously.
With the default model parameters in Table 1, a complete continuous lyophilization cycle can be simulated, including 1) freezing with controlled nucleation via VISF, 2) primary drying, and 3) secondary drying (Figure 6). The time evolution of the product temperature (Figure 6A), mass of ice (Figure 6B), and concentration of bound water (Figure 6C) can be obtained, given the operating pressure (Figure 6D) and temperature (Figure 6E). This information could be useful for various purposes. For example, it can guide process and equipment design concerning the chamber sizing and velocity profile of each vial, ensuring that the target residence time is met for each chamber. Simulation results can also be used to help identify pressure and temperature profiles to achieve some specific objectives, e.g., minimization of drying time. It is important to note that the entire simulation shown in Figure 6 can be computed in less than 1 s on a normal laptop, which makes the model very practical to be implemented for any purposes.

Complete simulation for the suspended‐vial continuous lyophilization process showing the time evolution of the A) product average temperature, B) total mass of ice, C) average concentration of bound water, D) operating pressure, and E) operating temperature.
Visualizing Spatiotemporal Data
As discussed in Section , one of the key considerations during the drying steps is to ensure that the product temperature at any location does not exceed the upper limit. Consequently, spatiotemporal data are needed. Spatial variation of temperature and concentration in the product are dependent on several factors. For instance, temperature gradients are larger when the sample thickness and heat transfer coefficient increase (see the analysis in Appendix ). 3.1 A
To demonstrate, we set the heat transfer coefficient and sample thickness to 30 Wm−2·K−1 and 0.02 m,[17] respectively. These values are noticeably higher than the default values in Table 1, and so the resulting gradients are more significant. Examples of spatiotemporal data obtained from our model are shown in Figures 7 and 8. During primary drying, the temperature gradient is about 6 K at the beginning and gradually decreases as the sublimation front recedes (Figure 7). A similar behavior can also be observed for the concentration of bound water in secondary drying, except that there is no sublimation front (aka moving interface).

Spatiotemporal evolution of the product temperature and sublimation front during primary drying. Only the frozen region is shown in the figure.

Spatiotemporal evolution of the concentration of bound water during secondary drying. The initial concentration is assumed to vary linearly from 5% (0.05 kg water/solid) at the top to 20% (0.2 kg water/kg solid) at the bottom.
Understanding and Optimizing VISF
A key benefit of mechanistic models is that they can sometimes provide important insights about the process when the experimental data are limited. This section employs the model and simulation to study the freezing step, which usually receives little attention compared to the drying steps. Spontaneous (aka uncontrolled) ice nucleation was already investigated in detail by Ref. [12, 13]. However, uncontrolled nucleation is not ideal for continuous lyophilization as described in Ref. [7]. Therefore, we focus on controlled nucleation, with the VISF technique as used in Ref. [7]. The input and parameter data are given in Tables 3 and 4.
Several experimental studies on VISF have been conduced in the literature. Here, we use our model and simulation results to provide insights into the process, and use that understanding to explain the previous experimental data. To clearly understand VISF, we first consider cases where that the nucleation temperature is fixed at 260 K; i.e., the effect of stochastic ice nucleation is excluded from the model (Figure 9A,B). In VISF, the key idea is to reduce the system pressure, typically from the atmospheric pressure (105 Pa) to the VISF pressure, to evaporate a small amount of liquid, resulting in a fast decrease in the product temperature and hence nucleation. The product temperature decreases faster with a lower VISF pressure (Figure 9A). For example, when VISF starts at 0.25 h, the temperature drops from the initial value of 268 K to the nucleation temperature of 260 K almost instantaneously for the VISF pressure of 100 Pa, while it takes about 10 min when the VISF pressure is 104 Pa. Consequently, the first nucleation occurs earlier at a lower VISF pressure (dash line in Figure 9B). During VISF, a small amount of liquid evaporates, which increases with a decrease in the VISF pressure (solid line in Figure 9B). This is expected because of a higher mass transfer driving force for evaporation at lower VISF pressure. In general, if VISF is carried out properly, the amount of liquid evaporating is small. In this case, the original liquid mass is about 2.9×10−3 kg, and so the mass loss of about 3×10−5 is almost negligible.
Next, we include the effect of stochastic ice nucleation into our VISF model for a more realistic analysis (Figures 9CD), with a Monte Carlo simulation of 104 runs for proper statistics. Our simulation result show that VISF can significantly reduce the variation in the product temperature, compared to the uncontrolled nucleation case (Figure 9C). A decrease in the VISF pressure also reduces the degree of variation. Besides the product temperature, The variation in the nucleation time (defined as the time when the first nucleation occurs) also decreases with the VISF pressure, with the first nucleation occurring earlier (Figure 9D). These results indicate that the nucleation process is well controlled with VISF (i.e., less variation in the nucleation time and temperature), agreeing with general experimental observation in the literature.
Finally, for model validation and implementation in real‐world applications, the model can be fitted to experimental data obtained from the system of interest for more accurate results; the two important parameters are the mass transfer coefficient and heat transfer coefficient associated with evaporation. For example, by using the data from Ref. [7] the temperature profile simulated by our model agrees well with the experimental data (Figure 9E).
The results presented in this section assume minimal vial‐to‐vial thermal interactions because the vials are arranged in a single row, in which all the vials experience the same heat transfer conditions throughout the process, as described in Section 3.5. This condition is not true in conventional lyophilization where a large number of vials are arranged in a hexagonal or rectangular array. In such cases, vial‐to‐vial interactions could significantly affect the distribution of nucleation times and freezing rates. For example, when one vial nucleates, an increase in the temperature of that vial could slightly heat the adjacent vials, which subsequently delays the first nucleation of those vials. The effects of vial‐to‐vial interactions on freezing have been discussed in Refs. [12, 13, 48]. In the context of modeling, these interactions can be incorporated straightforwardly by coupling our freezing model with the radiation network approach described in Section 3.5 and.Ref. [39]. In any case, such effects become much less important in controlled nucleation.
In summary, this section demonstrates how the model and simulation results elucidate the role of VISF and its operating conditions in promoting controlled nucleation and influencing the nucleation process, improving the uniformity of the product. Furthermore, we show that the model can explain real data relatively well. Hence, our model can be used to understand and guide the design and optimization of the VISF method for controlling the nucleation process in lyophilization.
![Click to view full size Controlled nucleation via vacuum induced surface freezing (VISF). A) Product temperature profiles at different VISF pressures when the nucleation temperature is fixed at 260 K. B) Nucleation time and mass loss due to evaporation at different VISF pressures when the nucleation temperature is fixed at 260 K. C) Product temperature profiles for uncontrolled nucleation and VISF at 5000 Pa and 100 Pa considering stochastic ice nucleation. D) Nucleation time at different VISF pressures considering stochastic ice nucleation. E) Comparison between the simulated temperature profile during VISF and experimental data from. [ ] [72090]](https://europepmc.org/articles/PMC12713072/bin/ADVS-12-e11693-g009.jpg)
Controlled nucleation via vacuum induced surface freezing (VISF). A) Product temperature profiles at different VISF pressures when the nucleation temperature is fixed at 260 K. B) Nucleation time and mass loss due to evaporation at different VISF pressures when the nucleation temperature is fixed at 260 K. C) Product temperature profiles for uncontrolled nucleation and VISF at 5000 Pa and 100 Pa considering stochastic ice nucleation. D) Nucleation time at different VISF pressures considering stochastic ice nucleation. E) Comparison between the simulated temperature profile during VISF and experimental data from. [ ] [72090]
| Symbol | Value | Unit |
|---|---|---|
| pt | see 72090 | Pa |
| T0 | 280 | K |
| ,,TTTgcu | see 72090 | K |
| hs2 | 60 | Wm·K−2−1 |
| hs3 | 60 | Wm·K−2−1 |
| Symbol | Value | Unit | Source |
|---|---|---|---|
| pt | see Figure in Ref. [] 3 [7] | Pa | [ ] [72090] |
| T0 | 268.27 | K | [ ] [72090] |
| Tg | see Figure in Ref. [] 3 [7] | K | [ ] [72090] |
| ,TTcu | 282 | K | estimated from data in Ref. [] [7] |
| hm | 1.3× 10−2 | kg/m·s2 | estimated from data in Ref. [] [7] |
Analysis of Condenser Failure
Typical process modeling focuses on behaviors of the system during its normal operation where the process is operated steadily under the desired conditions. A better process model should be able to simulate important abnormal conditions, e.g., equipment failure, that could occur due to various unexpected scenarios, which is critical in continuous manufacturing as these abnormal operations could affect the reliability, availability, and maintainability (RAM) as well as the safety of the plant/process.
In lyophilization, one of the crucial design considerations is associated with a condenser. During normal operation, the maximum capacity of a condenser must be higher than the rate of vapor production via sublimation, and choked flow should be avoided.[1] This operational constraint is to ensure that there will not be vapor accumulation in the equipment, which could subsequently lead to in a pressure increase. This scenario may not lead to safety‐related issues because the operating pressure in lyophilization is low and the amount of ice/water is generally not high enough to create overpressure. Nevertheless, an increase in the total pressure reduces the driving force for sublimation (see Equation (35)), which then prolongs the primary drying step. As a result, the final product quality could be affected. This section explores how to incorporate those dynamic behaviors into our model.
Most primary drying models, including our model, assume that the system pressure is well controlled, which is a reasonable assumption. To incorporate the condenser dynamics into the model, we consider cases where the total condenser capacity is not enough to condense the water vapor produced via sublimation during primary drying. In such cases, the mass balance for the water vapor in a chamber is[22](71)dpw,cdt=(jw−jw,max)RT¯VcMwwhere jw is the total mass flow rate of water vapor resulting from sublimation, jw, max is the maximum condenser capacity, Vc is the chamber volume, and Tavg is the average temperature in the chamber assumed to be constant for simplification. The mass flow rate of water vapor can be calculated by (72)jw=nvialAzNwwhere nvial is the number of vials in the chamber. By coupling Equations (71) and (72) with the primary drying model developed in Section 3.3, the effects of condenser failure or choked flow can be quantified.
With the specific parameters given in Table 5, the total pressure increases from the normal operating value of 3 to 20 Pa (Figure 10A). This pressure increase results from the total vapor flow exceeding the maximum condenser capacity, thus vapor accumulation in the chamber. When the system pressure increases, the driving force for sublimation (also the sublimation flux) decreases. After about 1 h, the system pressure becomes constant, indicating the equalization of the sublimation flux and condenser capacity. In this abnormal operation, the drying time and product temperature are higher than for the normal operation (Figures 10BC).

Simulation results comparing the normal operation and condenser failure scenario for the A) system pressure, B) sublimation front position, and C) product average temperature during primary drying.
| Symbol | Value | Unit | Source |
|---|---|---|---|
| T ¯ | 260 | K | assumed to be constant |
| nvial | 200 | — | — |
| Vc | 0.118 | m3 | [ ] [72090] |
| jw, max | 1.8× 10−5 | ms3 | [ ] [72090] |
Conclusion
This article proposes the first mechanistic model for continuous lyophilization, in which the state‐of‐the‐art suspended‐vial technology is considered. The model can simulate the entire lyophilization process, including the freezing, primary drying, and secondary drying steps. The freezing model considers preconditioning, vacuum‐induced surface freezing (VISF), spontaneous and controlled nucleation, solidification, and cooling. The primary drying model captures heat transfer in the frozen region and mass transfer resulting from sublimation of ice crystals at the sublimation front. The secondary drying model describes simultaneous heat transfer in the dried region and desorption of bound water. The overall model can describe the evolution of product temperature, ice/water fraction, and residual moisture throughout the process.
The proposed model is validated for all three steps including freezing, primary drying, and secondary drying, in which the model predictions are consistent with the experimental measurements in all cases. The validated model is demonstrated for a variety of applications related to process design and optimization. Every single simulation can be run within less than 1 s on a normal laptop, allowing the model to be employed for any purpose. The framework and results presented in this work are suitable for guiding the design and development of future continuous lyophilization technology.
With a well‐developed mechanistic model, future work could consider utilizing the model for several important tasks, e.g., state estimation, optimal control design, and uncertainty quantification, which will ultimately support the development of a high‐quality digital twin for continuous lyophilization to advance the manufacturing process.
Conflict of Interest
The authors declare no conflict of interest.




