Circadian rhythms, 24-hour repeating oscillations in daily physiology, are implicated in maintaining intestinal homeostasis. These rhythms are driven by the circadian clock, a molecular timekeeper found throughout cells of the body, including those of the intestinal epithelium. Loss of clock function has been found to worsen colitis; however, it is not clear how the clock impacts regeneration which enables a tissue to return to its homeostatic set point following an injury. To investigate these questions, we used a conditional knockout of the core clock gene, Bmal1, in mouse colon epithelial cells. Our data show that prior to injury Bmal1 promotes colon mucus production, which increases in thickness and abundance within goblet cells when mice are active and begin feeding. Bmal1 loss lowers mucus production but does not drive an apparent tissue phenotype until the system is injured and regenerates itself. In this context, Bmal1 epithelial loss drives a male-specific colitis exacerbation and a delay in the ability of colon epithelial cells of both male and female mice to resolve injury to return to their homeostatic set point. Our data suggest that epithelial sex-specific clock rhythms are needed for optimal colon barrier homeostasis.
