Evaluation of the genetic risk for COVID-19 outcomes in COPD and differences among worldwide populations

Feb 23, 2022PloS one

Genetic risk for COVID-19 outcomes in COPD and differences across global populations

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Abstract

No differences in genetic risk for COVID-19 susceptibility or outcomes were found between people with and a control group.

  • Genetic variations associated with COVID-19 susceptibility and severity did not show significant differences in individuals with COPD compared to controls.
  • All tested populations, including those of European descent, exhibited significant genetic differences in COVID-19 risk compared to the broader European population.
  • The findings suggest a low genetic influence on COVID-19 infection risk and severity in individuals with COPD.
  • High genetic heterogeneity was observed across major world populations for the same genetic variants, even within European sub-populations.

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Key figures

Fig 1
Allele frequencies of genetic variants linked to COVID-19 and severity in and control groups
Highlights similar genetic risk allele frequencies for COVID-19 outcomes in COPD and control groups, emphasizing genetic risk uniformity
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  • Panel a
    Allele frequencies for rs286914 and rs12329760 related to COVID-19 susceptibility in control and COPD groups; frequencies appear similar between groups
  • Panel b
    Allele frequencies for SNPs rs657152 and rs11385942 associated with in control and COPD groups; frequencies appear similar between groups
Fig 2
Control vs : number of people with cumulative COVID-19 for infection and severity
Highlights similar genetic risk profiles for COVID-19 infection and severity between COPD and control groups
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  • Panel a
    Number of individuals with 0 to 4 risk alleles for COVID-19 infection in control and COPD groups; allele counts appear similarly distributed between groups
  • Panel b
    Number of individuals with 0 to 4 risk alleles for in control and COPD groups; allele counts appear similarly distributed between groups
Fig 3
Control vs : polygenic risk scores for COVID-19 , hospitalization, severity, and survivability
Highlights similar genetic risk scores for COVID-19 outcomes in COPD and control groups, spotlighting genetic risk uniformity
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  • Panel a
    Polygenic risk scores for susceptibility to COVID-19 infection in control and COPD groups with median values shown; no significant difference (p = 0.05)
  • Panel b
    Polygenic risk scores for hospitalization due to COVID-19 infection in control and COPD groups with median values shown; no significant difference (p = 0.03)
  • Panel c
    Polygenic risk scores for in control and COPD groups with median values shown; no significant difference (p = 0.38)
  • Panel d
    Polygenic risk scores for survivability to COVID-19 infection in control and COPD groups with median values shown; no significant difference (p = 0.09)
Fig 4
proportions for COVID-19 and severity in different world populations
Highlights significant differences in COVID-19 risk allele frequencies across global populations, especially higher frequencies in Asian and African groups.
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  • Panel a
    Effect allele frequencies for rs286914 across European, Portuguese, Spanish, Italian, African, American, and Asian populations; African and American populations appear to have higher frequencies than European.
  • Panel b
    Effect allele frequencies for rs12329760 across the same populations; Asian population appears to have the highest frequency, with African and European populations lower.
  • Panel c
    Effect allele frequencies for rs657152 across populations; Asian population shows the highest frequency, American the lowest, with other populations intermediate.
  • Panel d
    Effect allele frequencies for rs11385942 across populations; Italian population appears to have the highest frequency, Asian population the lowest.
Fig 5
Number of people with cumulative COVID-19 in major world populations
Highlights significant genetic variation in COVID-19 risk alleles across global populations, especially higher counts in Portuguese and Spanish groups
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  • Panel a
    Estimation of individuals per million with 0 to 4 risk alleles for COVID-19 infection across European, Portuguese, Spanish, Italian, African, American, and Asian populations; Portuguese and Spanish populations appear to have higher counts of individuals with 1 or more risk alleles compared to European reference
  • Panel b
    Estimation of individuals per million with 0 to 4 risk alleles for across the same populations; all non-European populations show statistically significant differences from the European reference in allele distribution
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Full Text

What this is

  • This research investigates the genetic risk factors for COVID-19 outcomes in individuals with ().
  • It compares genetic variants associated with COVID-19 across various global populations, focusing on individuals with .
  • The study finds no significant genetic predisposition for severe COVID-19 outcomes in patients compared to controls.

Essence

  • Genetic factors do not significantly increase the risk of severe COVID-19 outcomes in patients. High genetic variability exists across different populations, even among those of European descent.

Key takeaways

  • No significant differences in genetic risk for COVID-19 outcomes were found between patients and healthy controls. This was consistent across multiple genetic variants and risk assessments.
  • A high level of genetic heterogeneity was observed across populations, with significant differences in allele frequencies for COVID-19 susceptibility and severity among European and other global populations.
  • The findings suggest that the increased risk of poor COVID-19 outcomes in patients is likely due to factors other than genetic predisposition, such as chronic respiratory conditions.

Caveats

  • The study's sample size is relatively small, which may limit the generalizability of the findings. The cohort was enriched with heavy smokers, potentially skewing results.
  • Some genetic variants of interest were not analyzed due to absence in the cohorts, which could affect the completeness of the genetic risk assessment.

Definitions

  • Chronic obstructive pulmonary disease (COPD): A progressive lung disease characterized by increasing breathlessness, often caused by long-term exposure to harmful substances.
  • Single nucleotide polymorphisms (SNPs): Genetic variations where a single nucleotide differs between individuals, often associated with disease susceptibility.
  • Polygenic risk score (PRS): A score that estimates an individual's genetic predisposition to a trait or disease based on the cumulative effect of multiple genetic variants.

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