What this is
- This research maps the global landscape of studies related to Parkinson's disease (PD) from 2007 to 2024.
- It analyzes 1,578 publications to identify trends, key contributors, and collaborative networks in this field.
- The findings indicate that the United States leads in publication output, with McGill University being the top institution.
Essence
- The bibliometric analysis reveals significant trends in research related to Parkinson's disease, highlighting the USA as the most productive country and McGill University as the leading institution. Key research themes include the PINK1/Parkin pathway, mitochondrial quality control, and neuroinflammation.
Key takeaways
- The United States produced 479 publications, accounting for 30.35% of the total output in research related to PD.
- McGill University led with 52 publications, indicating its central role in advancing research in this area.
- Research themes identified include the PINK1/Parkin pathway, mitochondrial quality control, and the roles of α-synuclein and neuroinflammation.
Caveats
- The analysis is limited to English-language publications from the Web of Science Core Collection, potentially overlooking relevant studies in other languages or databases.
- The presence of authors with similar names may affect the accuracy of the collaborative network analysis.
Definitions
- Mitophagy: The process of selectively degrading damaged mitochondria through autophagy to maintain cellular health.
AI simplified
Introduction
Parkinson's disease (PD), recognized as the fastest-growing neurodegenerative disorder globally, currently affects over 11.7 million individuals worldwide [1]. Characterized by progressive motor dysfunction and debilitating non-motor symptoms, PD imposes substantial socioeconomic burdens, evidenced by the $51.9 billion total economic burden recorded in the U.S. in 2017 [2]. Global projections indicate a concerning 1.5-fold increase in PD prevalence by 2035, primarily driven by demographic aging trends [1]. While epidemiological studies highlight geographical variations in disease burden, China's projected contribution to the global PD population warrants particular attention, with estimates suggesting it may account for nearly half of worldwide cases by 2030 [3]. This escalating public health challenge underscores the urgent need for multinational collaborative research and innovative therapeutic strategies. Neuropathologically, PD is characterized by the progressive loss of dopaminergic neurons in the substantia nigra pars compacta (SNpc) and the accumulation of misfolded α-synuclein in Lewy bodies and lewy neurites [4, 5]. Although the etiology of PD has not yet been fully elucidated, accumulating evidence indicates that mitochondrial dysfunction plays a central role in disease progression. Mitochondria are essential for neuronal survival due to their vital role in energy production [6]. In dopaminergic neurons, mitochondrial dysfunction impairs ATP production, contributing to Parkinson's disease (PD) pathogenesis by triggering neurodegeneration and compromising calcium buffering, redox balance, and apoptosis [7]. Notably, the pioneering discovery by Schapira's team in 1989 first reported significantly reduced activity of mitochondrial respiratory chain Complex I in postmortem brain tissues of PD patients, establishing an important molecular link between mitochondrial impairment and PD pathogenesis [8]. This discovery established the fundamental basis for the " mitochondrial deficiency hypothesis".
Subsequent genetic investigations have further corroborated this framework by demonstrating direct associations between pathogenic mutations in mitochondrial quality control genes (notably PINK1 and Parkin) and familial PD cases [9, 10]. PINK1/Parkin-linked PD typically presents with early-onset, slower progression, and minimal cognitive decline compared to idiopathic PD, which predominantly affects older individuals with accelerated cognitive deterioration [11 –13]. Notably, while murine models lacking PINK1 or Parkin exhibit only subtle phenotypes, Drosophila genetics played a pivotal role in establishing mitophagy, as loss-of-function mutations in these genes caused severe mitochondrial dysfunction and dopaminergic neurodegeneration mimicking human PD [14]. PD animal models induced by mitochondrial toxins (e.g., MPTP and rotenone) provide valuable insights into acute toxicity leading to dopaminergic neuron degeneration in the substantia nigra [15]. However, there are key differences compared to human PD, particularly in neuropathology and the relative absence of protein inclusion pathology such as Lewy bodies [16]. Despite these differences, these models still highlight the importance of mitochondrial dysfunction in PD pathogenesis. The accumulation of damaged mitochondria can trigger neuronal death, highlighting the importance of efficient mitochondrial quality control mechanisms [17].
Mitophagy, the targeted degradation of mitochondria via autophagy, is a key process for maintaining cellular health [18]. The pathogenesis of PD is closely associated with dysfunctional mitophagy. This process is precisely regulated through both PINK1/Parkin-dependent and PINK1/Parkin-independent pathways. When mitochondrial membrane potential (Δψm) is lost, the serine/threonine kinase PINK1(PTEN-induced putative kinase 1) is no longer imported and cleaved. Instead, it accumulates on the outer mitochondrial membrane (OMM). There, it recruits and phosphorylates the E3 ubiquitin ligase Parkin [19]. Activated Parkin then ubiquitinates numerous OMM proteins (e.g., mitofusins, TOM20, VDAC1) [20], creating phosphorylated ubiquitin chains. These chains are decoded by autophagic receptors such as NDP52, OPTN, and NBR1. These receptors simultaneously engage LC3/GABARAP on the forming phagophore and recruit the core autophagy machinery to drive selective engulfment and lysosomal degradation of the damaged organelle [21, 22]. In parallel, PINK1/Parkin-independent mitophagy is executed by a diverse set of receptors—BNIP3, NIX/BNIP3L, and FUNDC1—that are constitutively present or stress-inducibly expressed on the OMM and directly bind LC3 via LC3-interacting regions [23]. Furthermore, lipid-mediated pathways, in which cardiolipin externalization or ceramide clustering on the OMM serves as an "eat-me" signal, also contribute to mitophagy [23, 24]. Additionally, mitochondrial-derived vesicles (MDVs) can bud off and deliver oxidized cargo to lysosomes for microautophagy [25]. Together, these interlocking surveillance systems ensure rapid recognition, segregation, and disposal of dysfunctional mitochondria. Their convergence or failure ultimately determines neuronal survival in PD.
In addition to genetic determinants, environmental factors and aging critically impair mitophagic function. With advancing age, the progressive decline in mitochondrial function and reduced autophagic capacity lead to intracellular accumulation of damaged mitochondria, which may constitute a key pathogenic mechanism in PD [26]. In PD therapeutic research, intervention strategies targeting mitophagy have gradually become an important research direction. Several recently developed small-molecule compounds, such as those activating PINK1 or Parkin, have demonstrated potential for enhancing mitophagy in preclinical models, offering new therapeutic prospects for PD [27]. In conclusion, mitophagy plays a central role in the pathogenesis of PD. Elucidating the regulatory mechanisms of mitophagy and its dysfunction in neurodegenerative contexts not only deepens our understanding of PD pathology, but also establishes a critical theoretical framework for developing novel therapeutic interventions targeting mitochondrial quality control.
The growing scientific interest in mitophagy's role in PD pathogenesis underscores the critical need for systematic literature analysis. Comprehensive evaluation of research evolution is essential for understanding how research trends have evolved, identifying gaps in knowledge, and guiding future research efforts. In contrast to traditional reviews, bibliometric analysis provides distinct methodological advantages: it enables efficient processing of large-scale literature datasets, quantitative identification of research hotspots through citation network analysis, and visual mapping of conceptual relationships, thereby eliminating the need for labor-intensive manual article evaluations. This study employs integrated bibliometric and scientometric visualization techniques to systematically examine global research patterns in PD-related mitophagy through 2024. By analyzing publication metrics, citation networks, and collaborative patterns, our approach traces the historical development of mitophagy research while identifying emerging therapeutic paradigms. It serves as a valuable roadmap for researchers, clinicians, and funding agencies, while also emphasizing the significant achievements and collaborative efforts that have influenced this field of study.
Materials and methods
Data collection
This study primarily utilized the Web of Science Core Collection (WoSCC; Clarivate Analytics, USA)—the gold-standard multidisciplinary citation index encompassing over 34,000 peer-reviewed journals across 254 research categories since 1900—to ensure rigorous bibliometric analysis of high-impact scientific literature. (Platform access: https://www.webofscience.com/wos↗). To systematically map the global research landscape of mitophagy in PD, the following search formula was applied: TS = (Parkinson* OR PD) AND TS = (mitophagy OR "mitochondrial autophagy"). The search was limited to articles and reviews published up to December 2024. The final search was conducted on January 12, 2025, to ensure inclusion of the most recent publications and to prevent data bias due to database updates. A total of 1712 documents were retrieved.
The initial search yield was filtered to include only English-language publications. Editorial material, book chapters, early access, meeting abstract, proceeding paper, correction, letter, data paper, publication with expression of concern, and retracted publication were excluded. The final dataset comprised articles and reviews articles that specifically addressed aspects of mitophagy in the context of PD.
Bibliometric analysis
To strengthen the validity and multidimensional scope of our investigation, we employed several bibliometric tools to uncover trends and patterns within this field.
CiteSpace, a software developed by Chaomei Chen, was pivotal in visualizing the co-citation and co-authorship networks, as well as tracking the evolution of key terms within the field [28]. Our utilization of CiteSpace 6.4 R1 allowed us to delve into hotspots countries/regions, dual-map overlays of journals, keyword timelines, and co-citation analyses.
In conjunction with CiteSpace, VOSviewer, developed by Nees Jan van Eck and his team, was instrumental in the bibliometric network graph analysis [29]. In this study, we utilized VOSviewer (version 1.6.20; Centre for Science and Technology Studies, Leiden University, The Netherlands) to visualize the distribution of countries/regions, institutions, and journals, and to construct co-authorship and keyword co-occurrence networks. The clustering algorithm of VOSviewer, which is based on a similarity matrix and the VOS mapping technique, enabled the automated clustering process. We also employed Pajek (version 5.18; developed by Andrej Mrvar and Vladimir Batagelj, Faculty of Computer and Information Science, University of Ljubljana) in conjunction with VOSviewer. Pajek is an advanced tool for network analysis, specializing in the visualization and management of large-scale networks [30]. In our research, Pajek was used to calculate and optimize graph data and correlation networks, thereby enhancing the clarity and interpretability of the network visualizations.
To further enhance our analysis, we employed Bibliometrix, an R-based tool, to examine key bibliometric data [31]. For the visualization and predictive modeling of publication trends over time, including both annual and predicted publication volumes, we utilized OriginPro 2024 software (OriginLab Corporation, 2024).
Ethical considerations
This study is a bibliometric analysis, and all data were obtained from publicly available academic database. As the research did not involve human or animal experimentation, personal data collection, or sensitive information, ethical approval was not required. All data were aggregated and analyzed in compliance with database terms of use, copyright regulations, and academic integrity standards to ensure the transparency and reproducibility of the study.
Results
Literature overview

Literature screening process and results for mitophagy in PD
Publication outputs and trends
Figure 2B presents a nonlinear fitting curve generated using OriginPro 2024 software, which models the logistic growth of annual publications in this field from 2007 to 2024. The curve, derived from logistic regression analysis, is displayed alongside the actual publication data points and exhibits a strong correlation with an R-Square value of 0.9422, indicating a reliable fit. It forecasts a sustained rise in the number of publications, estimating around 225 publications per year by 2040. This projection is depicted by a red curve, accompanied by a 95% prediction band and a 95% confidence band, which visually represent the uncertainty associated with the predictions by accounting for data variability.

Description and forecast of publication volume for mitophagy-related research in PD.The chart illustrates the annual publication volume (purple bar chart) and cumulative publication volume (dark blue line chart) related to mitophagy in PD from 2007 to 2024, showing an overall increasing trend, with the highest number of publications in 2021. The number of publications ranges from a minimum of 1 in 2007 to a maximum of 178 in 2021, with an average of 87.67 and a standard deviation of 58.27.The left chart depicts the forecasted annual number of publications from 2025 to 2040. It presents the logistic fit model, along with the 95% prediction band and the 95% confidence band. The parameters of the logistic model are A1 = −74.62532, A2 = 232.91223, × 0 = 2014.64653, and p = 302.71514, with an R-Square value of 0.9422, indicating a high degree of model fit. This model suggests a continuous increase in the volume of publications, projecting approximately 225 publications annually by 2040. The right chart is a zoomed-in view within the dashed line frame for clarity A B
Analysis of countries/regions and cooperation relationships
The USA leads with the most publications (479, 30.35%) and a betweenness centrality of 0.58—more than double that of the second, England (0.24), and far above others. This highlights the USA's key role in the global research network and its significant impact on mitophagy research in PD. China, with 353 (22.37%) publications and an intermediary centrality of 0.13, also figures prominently, reflecting its growing impact on global scientific discourse. England (170, 10.77%) and Germany (122, 7.73%) further underscore the significant European contribution to this research domain. However, the lower intermediary centrality values for these countries/regions suggest that their role in bridging international collaborations could be further enhanced.
Figure 3C provides an overview of the top 9 countries/regions with the strongest citation bursts, sorted by the start time of their respective bursts. A citation burst signifies a period during which a country or a region's scientific publications receive a sudden and significant increase in citations. The USA began its significant burst in 2007, while China and India both demonstrate notable bursts from 2022 to 2024, with China's burst strength reaching 20.96. These bursts reflect critical periods of intense research activity and influence within the field.
Figure 3D presents the annual publication trends for the USA, China, and India, which are among the countries/regions with the highest publication volumes and significant citation bursts. The USA shows a consistent increase in publication numbers over the years, with fluctuations but an overall upward trend, peaking around 2022. China's trend shows a steady rise from 2018 onwards, aligning with the table data that indicates a period of rapid growth in research output and influence. India, starting with a lower base,shows a gradual increase in publications, with a more pronounced rise from 2020.

Country/region analysis of mitophagy in PD.Visualization of the collaborative network among all 69 countries/regions using VOSviewer. Node size shows research involvement, color denotes clusters, and line thickness indicates collaboration strength.Chord diagram of international collaborations, with arc width indicating collaboration strength.Top 9 countries/regions with citation bursts, showing years and burst strengths.Publication trends for USA, China, and India from 2007 to 2024, with lines representing countries and axes showing years and publication numbers A B C D
| Rank | Countries/regions | Count (%) | Centrality | Total link strength |
|---|---|---|---|---|
| 1 | USA | 479 (30.35%) | 0.58 | 312 |
| 2 | China | 353 (22.37%) | 0.13 | 102 |
| 3 | England | 170 (10.77%) | 0.24 | 188 |
| 4 | Germany | 122 (7.73%) | 0.08 | 153 |
| 5 | Italy | 121 (7.67%) | 0.09 | 99 |
| 6 | Canada | 95 (6.02%) | 0.12 | 90 |
| 7 | Japan | 89 (5.64%) | 0.03 | 31 |
| 8 | India | 63 (3.99%) | 0.05 | 26 |
| 9 | South Korea | 62 (3.93%) | 0.04 | 19 |
| 10 | Spain | 49 (3.11%) | 0.08 | 61 |
Analysis of and institutional cooperations
Figure 4 A presents an institutional collaboration network map generated using VOSviewer. This network comprises 180 institutions, each depicted as a node, selected based on having published at least five papers, while excluding those lacking partnerships with other institutions. The resultant chart delineates five distinct clusters, with each node's color corresponding to its specific group. Node sizes are proportional to the number of publications, which highlights institutions with higher research output. The thickness of the lines connecting the nodes reflects the extent of collaboration, with thicker lines signifying more frequent cooperative interactions. Upon analyzing the network, it is evident that certain institutions occupy central positions within the diagram, such as McGill University, University College London, University of Pittsburgh, Mayo Clinic, and the National Institute of Neurological Disorders and Stroke. This indicates their crucial role in the overall collaborative network. These central nodes, distinguished by their larger size and numerous connections, likely represent key research hubs actively involved in knowledge exchange and joint research initiatives. Furthermore, it is apparent that institutions with close collaborative relationships predominantly belong to the same country.
Figure 4B presents a network map with nodes identical in size and spatial arrangement to those in Fig. 4A. Unlike Fig. 4A, the color of the nodes in Fig. 4B reflects the average year of publication. Nodes displaying red tones indicate more recent academic contributions. The network shows that the nodes on the periphery of the collaboration network, many of which represent Chinese institutions, exhibit a deeper red hue; this suggests that these institutions have been quite active recently in the research area of mitophagy in PD.

Institutional Analysis in the Field of Mitophagy in PD.Visualization of the collaborative network among institutions using VOSviewer. This figure displays institutions with a publication count surpassing 5. The nodes, varied in color, denote different institutional clusters, and the nodes'size corresponds to the frequency of institutional involvement.Institutional collaboration network map illustrating the average publication year. Nodes are colored based on the average year of publication, with redder shades indicating more recent publications and bluer shades representing older publication periods A B
| Rank | Institution | Country/region | Publication | Citations | Total link strength |
|---|---|---|---|---|---|
| 1 | McGill University | Canada | 52 | 5329 | 84 |
| 2 | University College London | England | 45 | 3791 | 128 |
| 3 | University of Pittsburgh | USA | 38 | 3953 | 44 |
| 4 | Juntendo University | Japan | 34 | 4027 | 55 |
| 5 | Mayo Clinic | USA | 30 | 1752 | 99 |
| 6 | Chinese Academy of Sciences | China | 29 | 1268 | 77 |
| 7 | National Institute of Neurological Disorders and Stroke | USA | 27 | 10,427 | 61 |
| 8 | University of Lübeck | Germany | 26 | 1899 | 72 |
| 9 | Johns Hopkins University | USA | 25 | 4827 | 83 |
| 10 | University of Tübingen | Germany | 23 | 3506 | 119 |
Analysis of journals
When discussing the significance of journal distribution in the field of mitophagy in PD, Bradford's Law offers a crucial perspective. Bradford's Law, introduced by Samuel C. Bradford, describes a specific pattern of journal distribution within scientific literature. According to this law, if journals are sorted by the number of papers they publish on a particular subject, they can be divided into several zones, with each zone containing an equal number of papers, while the number of journals in each zone decreases geometrically, meaning a small number of core journals account for the majority of publications [32].
Table 3 presents the top 10 journals by number of publications, co-citation frequency, impact factor (IF;JCR 2024), and JCR quartile. Autophagy tops the list with 55 publications and an IF of 14.3, ranking in JCR Q1.
Figure 7B focuses on the average normalized citations (avg. norm. citations) metric, visualized by color intensity. Deeper red indicates a higher frequency of being cited, while bluer hues signify lower citation rates. Journals like Nature, Journal of Cell Biology, Molecular Cell, Ageing Research Reviews and Neuron appear in deep red, denoting higher average citation counts and thus prominent status and broad impact.

Journal Distribution in Mitophagy Research in PD According to Bradford's Law

Displays the quantity of articles in core journals associated with mitophagy in PD research.Illustrates the distribution of journals across Bradford's Law zones, with an emphasis on core (Zone 1), secondary (Zone 2), and peripheral (Zone 3) journals A B

Citation Network Analysis of Journals in PD Mitophagy Research.Each node represents a journal, with the size indicating the number of publications. The lines between nodes represent citation relationships. Nodes are color-coded to denote different journal clusters.Node colors indicate the average normalized citation score (avg. norm. citations), with a gradient from blue (lower scores, less influence) to red (higher scores, more influence) A B

Dual-map overlay of journals displaying citation relationships. Citing journals are positioned on the left, while cited journals are on the right, with colored paths illustrating the connections between them
| Rank | Journal | Publications | IF(JCR2024) | JCR quartile |
|---|---|---|---|---|
| 1 | Autophagy | 55 | 14.3 | Q1 |
| 2 | International Journal of Molecular Sciences | 53 | 4.9 | Q1 |
| 3 | Journal of Biological Chemistry | 40 | 3.9 | Q2 |
| 4 | Cells | 39 | 5.2 | Q2 |
| 5 | Human Molecular Genetics | 32 | 3.2 | Q2 |
| 6 | Scientific Reports | 29 | 3.9 | Q2 |
| 7 | Molecular Neurobiology | 25 | 4.3 | Q2 |
| 8 | Cell Death & Disease | 24 | 9.6 | Q1 |
| 9 | Frontiers in Neuroscience | 23 | 3.2 | Q2 |
| 10 | Neurobiology of Disease | 22 | 5.6 | Q1 |
Analysis of authors

Document productivity distribution among authors based on Lotka's Law

Authorship Analysis of Mitophagy Research in PD.This figure includes the top 1000 authors out of 7428 based on total link strength, excluding those not connected to other nodes, resulting in a final network of 802 authors. The nodes, differentiated by color, represent authors within various clusters, with node size reflecting the frequency of their publications.Network map highlighting key authors, with nodes colored by average normalized citations (avg. norm. citations). Redder nodes indicate higher academic influence A B

Collaboration network of key authors with a minimum of 8 publications in mitophagy research.This network includes authors who have published 8 or more papers, with 41 authors remaining after excluding those without connections to other nodes. The nodes, differentiated by color, represent authors within various clusters, with node size reflecting the frequency of their publications.Node colors show the average publication year. Redder nodes mean more recent activity, bluer nodes indicate older work. This helps spot active researchers and groups in the field A B
| Rank | Author | Number of publication | Ciations | total link strength | Institutions |
|---|---|---|---|---|---|
| 1 | Hattori Nobutaka | 28 | 3731 | 229 | Juntendo Univ |
| 2 | Edward A. Fon | 26 | 3252 | 184 | McGill Univ |
| 3 | Springer Wolfdieter | 26 | 3918 | 273 | Mayo Clinic |
| 4 | Fabienne C. Fiesel | 23 | 3739 | 256 | Mayo Clinic |
| 5 | Richard J. Youle | 20 | 12,235 | 101 | NINDS |
| 6 | Charleen T. Chu | 19 | 1585 | 55 | Univ Pittsburgh |
| 7 | Christine Klein | 19 | 1544 | 188 | Univ Lubeck |
| 8 | Noriyuki Matsuda | 17 | 3280 | 121 | Tokyo Metropolitan Inst Med Sc |
| 9 | Anne Gruenewald | 16 | 1744 | 171 | Univ Luxembourg |
| 10 | Jean-Francois Trempe | 16 | 829 | 120 | McGill Univ |
Analysis of keyword and topic

Co-occurrence network of keywords in the study of mitophagy in PD. The network in VOSviewer shows co-occurrence relationships among keywords, organized into seven color-coded clusters from right to left: red (Cluster 1), green (Cluster 2), blue (Cluster 3), yellow (Cluster 4), purple (Cluster 5), light blue (Cluster 6), and orange (Cluster 7)

Trend analysis of key terms in mitophagy research in PD

Heatmap analysis of keywords.Annual heatmap from 2007 to 2024. The annual heat value of each keyword is obtained by dividing the number of citations in that year by the total number of citations in that year.Keyword relevance heatmap. Keywords with high popularity in similar time periods are clustered into one category and marked with different colors A B
| Rank | Keyword | Occurrences | Total link strength |
|---|---|---|---|
| 1 | mitophagy | 969 | 9948 |
| 2 | pink1 | 494 | 5254 |
| 3 | autophagy | 484 | 5068 |
| 4 | parkinson's disease | 467 | 5135 |
| 5 | mitochondria | 432 | 4810 |
| 6 | oxidative stress | 390 | 4215 |
| 7 | parkinson disease | 382 | 3878 |
| 8 | parkin | 357 | 3989 |
| 9 | α-synuclein | 319 | 3492 |
| 10 | mutations | 270 | 2661 |
| 11 | mitochondrial dysfunction | 230 | 2375 |
| 12 | neurodegeneration | 218 | 2419 |
| 13 | ubiquitin | 189 | 2102 |
| 14 | disease | 182 | 1814 |
| 15 | degradation | 180 | 1852 |
| 16 | dysfunction | 176 | 1674 |
| 17 | activation | 158 | 1538 |
| 18 | damaged mitochondria | 144 | 1639 |
| 19 | protein | 142 | 1407 |
| 20 | cell-death | 136 | 1437 |
| Rank | Authors | Article Title | Source Title | Document Type | Times Cited | Publication Year | DOI |
|---|---|---|---|---|---|---|---|
| 1 | Youle, RJ et al. | Mechanisms of mitophagy [] [22] | NATURE REVIEWS MOLECULAR CELL BIOLOGY | Review | 2487 | 2011 | 10.1038/nrm3028 |
| 2 | Geisler, S et al. | PINK1/Parkin-mediated mitophagy is dependent on VDAC1 and p62/SQSTM1 [] [36] | NATURE CELL BIOLOGY | Article | 2218 | 2010 | 10.1038/ncb2012 |
| 3 | Narendra, DP et al. | PINK1 Is Selectively Stabilized on Impaired Mitochondria to Activate Parkin [] [35] | PLOS BIOLOGY | Article | 2204 | 2010 | 10.1371/journal.pbio.1000298 |
| 4 | Hou, YJ et al. | Ageing as a risk factor for neurodegenerative disease [] [37] | NATURE REVIEWS NEUROLOGY | Review | 1737 | 2019 | 10.1038/s41582-019-0244-7 |
| 5 | Pickrell, AM et al. | The Roles of PINK1, Parkin, and Mitochondrial Fidelity in Parkinson's Disease [] [38] | NEURON | Review | 1558 | 2015 | 10.1016/j.neuron.2014.12.007 |
| 6 | Matsuda, N et al. | PINK1 stabilized by mitochondrial depolarization recruits Parkin to damaged mitochondria and activates latent Parkin for mitophagy [] [19] | JOURNAL OF CELL BIOLOGY | Article | 1494 | 2010 | 10.1083/jcb.200910140 |
| 7 | Ashrafi, G et al. | The pathways of mitophagy for quality control and clearance of mitochondria [] [39] | CELL DEATH AND DIFFERENTIATION | Review | 1306 | 2013 | 10.1038/cdd.2012.81 |
| 8 | Dias, V et al. | The Role of Oxidative Stress in Parkinson's Disease [] [40] | JOURNAL OF PARKINSONS DISEASE | Review | 1303 | 2013 | 10.3233/JPD-130230 |
| 9 | Vives-Bauza, C et al. | PINK1-dependent recruitment of Parkin to mitochondria in mitophagy [] [41] | PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA | Article | 1295 | 2010 | 10.1073/pnas.0911187107 |
| 10 | Chen, HC et al. | Mitochondrial dynamics-fusion, fission, movement, and mitophagy-in neurodegenerative diseases [] [42] | HUMAN MOLECULAR GENETICS | Review | 1135 | 2009 | 10.1093/hmg/ddp326 |
| 11 | Tanaka, A et al. | Proteasome and p97 mediate mitophagy and degradation of mitofusins induced by Parkin [] [43] | JOURNAL OF CELL BIOLOGY | Article | 1088 | 2010 | 10.1083/jcb.201007013 |
| 12 | Fang, EF et al. | Mitophagy inhibits amyloid-β and tau pathology and reverses cognitive deficits in models of Alzheimer's disease [] [44] | NATURE NEUROSCIENCE | Article | 1082 | 2019 | 10.1038/s41593-018-0332-9 |
| 13 | Chen, Y et al. | PINK1-Phosphorylated Mitofusin 2 Is a Parkin Receptor for Culling Damaged Mitochondria [] [45] | SCIENCE | Article | 1019 | 2013 | 10.1126/science.1231031 |
| 14 | Jin, SM et al. | Mitochondrial membrane potential regulates PINK1 import and proteolytic destabilization by PARL [] [46] | JOURNAL OF CELL BIOLOGY | Article | 1017 | 2010 | 10.1083/jcb.201008084 |
| 15 | Wang, XN et al. | PINK1 and Parkin Target Miro for Phosphorylation and Degradation to Arrest Mitochondrial Motility [] [47] | CELL | Article | 910 | 2011 | 10.1016/j.cell.2011.10.018 |
Highly cited reference analysis
Table 7 presents the top 10 most cited references. These references were identified using CiteSpace software, with the "Look Back Year (LBY)" parameter set at 5 years. This means that CiteSpace considered the citation status of each paper within 5 years after its publication. The purpose of this setting is to focus more precisely on recent research advancements and streamline the analysis network. By limiting the analysis to the most recent 5 years, we aim to identify papers that have garnered significant attention shortly after their publication, rather than those that have accumulated citations over a longer period. This approach helps to more accurately reflect the current research landscape and identify key papers that are driving recent trends. However, it is also worth noting that this setting may exclude some early foundational articles in the field. For example, the seminal work by Valente et al. on the identification of mutations in PINK1 as a cause of hereditary early-onset Parkinson's disease is a foundational study in this field [9]. Similarly, Clark et al. demonstrated the role of Drosophila PINK1 in mitochondrial function and its genetic interaction with parkin [52], while Park et al. further elucidated the mitochondrial dysfunction in Drosophila PINK1 mutants and how it can be complemented by parkin [53]. These early studies laid the groundwork for understanding the role of PINK1 in PD but may not be included in our analysis due to the 5-year LBY parameter. Despite this potential limitation, the current analysis still provides valuable insights into the most impactful recent research in the field.
Among these highly cited papers, 90% are original research articles. A significant portion of these highly cited publications overlaps with the previously mentioned top 15 highly cited publications (see Table 6), highlighting their importance and representativeness.
Figure 16B highlights the top 25 references with the strongest citation bursts. The first two bursts occurred in 2009, with papers titled "Parkin is recruited selectively to impaired mitochondria and promotes their autophagy" [50] and "The PINK1/Parkin pathway regulates mitochondrial morphology" [54]. Notably, the paper by Narendra et al. has the strongest burst (strength = 64.35) and its burst duration lasted until 2013. Another high-burst paper is "The ubiquitin kinase PINK1 recruits autophagy receptors to induce mitophagy" by Lazarou et al. (strength = 61.16) [48]. The data shows that papers published in 2010 caused the most citation bursts (seven in total), indicating a surge in related research activities.

Reference analysis in the context of mitophagy in PD.Visualization of the reference network in CiteSpace. The size of each node corresponds to the frequency with which the respective article is co-cited. The network map highlights the collaborative ties among authors, with lines indicating co-citation relationships. The color gradient ranging from purple to red signifies the publication years, with purple representing earlier publications and red indicating more recent ones.References are clustered based on title similarity, with each cluster color-coded and labeled with numbers and themes, including topics such as #0 selective autophagy, #1 pink1-associated Parkinson's disease, #2 intracellular organelle, #3 e3 ubiquitin ligase parkin, #4 autophagic cell stress, #5 neuronal damage, #6 targeting mitophagy, #7 mitochondrial dynamics, #8 sqstm1 cooperate, #9 mitochondrial fission, #10 small n-terminal tag, #11 cytosolic pink1, and #12 mitochondrial morphology, #13 mitophagy in neurodegenerative diseases A B

Dependency relationships among co-cited literature clusters in the research on mitophagy in PD, generated by displaying the top 50% of cluster dependency paths. The direction of the arrows between clusters indicates the direction of influence, such as an arrow pointing from Cluster B to Cluster A signifies that the development of Cluster A is influenced by Cluster B.The top 25 references with the strongest citation bursts A B
| Rank | Article Title | Article type | Source | Authors | Year | Cited | IF(JCR2024) | JCR quartile | DOI |
|---|---|---|---|---|---|---|---|---|---|
| 1 | PINK1/Parkin-mediated mitophagy is dependent on VDAC1 and p62/SQSTM1 [] [35] | Article | Nature Cell Biology | Geisler S | 2010 | 218 | 17.3 | Q1 | 10.1038/ncb2012 |
| 2 | PINK1 is selectively stabilized on impaired mitochondria to activate Parkin [] [36] | Article | PLoS Biology | Narendra DP | 2010 | 211 | 7.2 | Q1 | 10.1371/journal.pbio.1000298 |
| 3 | PINK1-dependent recruitment of Parkin to mitochondria in mitophagy [] [41] | Article | Proceedings of the National Academy of Sciences | Vives-Bauza C | 2010 | 176 | 9.4 | Q1 | 10.1073/pnas.0911187107 |
| 4 | The roles of PINK1, parkin, and mitochondrial fidelity in Parkinson's disease [] [38] | Review | Neuron | Pickrell AM | 2015 | 169 | 14.7 | Q1 | 10.1016/j.neuron.2014.12.007 |
| 5 | The ubiquitin kinase PINK1 recruits autophagy receptors to induce mitophagy [] [48] | Article | Nature | Lazarou M | 2015 | 161 | 50.5 | Q1 | 10.1038/nature14893 |
| 6 | PINK1 stabilized by mitochondrial depolarization recruits Parkin to damaged mitochondria and activates latent Parkin for mitophagy [] [19] | Article | The Journal of Cell Biology | Matsuda N | 2010 | 160 | 7.4 | Q1 | 10.1083/jcb.200910140 |
| 7 | Ubiquitin is phosphorylated by PINK1 to activate parkin [] [49] | Article | Nature | Koyano F | 2014 | 147 | 50.5 | Q1 | 10.1038/nature13392 |
| 8 | Parkin is recruited selectively to impaired mitochondria and promotes their autophagy [] [50] | Article | The Journal of Cell Biology | Narendra DP | 2008 | 147 | 7.4 | Q1 | 10.1083/jcb.200809125 |
| 9 | PINK1 phosphorylates ubiquitin to activate Parkin E3 ubiquitin ligase activity [] [51] | Article | The Journal of Cell Biology | Kane LA | 2014 | 133 | 7.4 | Q1 | 10.1083/jcb.201402104 |
| 10 | Mitophagy inhibits amyloid-β and tau pathology and reverses cognitive deficits in models of Alzheimer's disease [] [44] | Article | Nature Neuroscience | Fang EF | 2019 | 125 | 21.2 | Q1 | 10.1038/s41593-018-0332-9 |
Discussion
Early pioneering studies and their impact on mitophagy research in PD
Our study identified relevant literature starting from 2007 by using the search terms TS = (Parkinson* OR PD) AND TS = (mitophagy OR "mitochondrial autophagy"). It is important to note that foundational studies in the field of mitophagy date back to the 1990s. For instance, the initial reports of mutations in the PRKN and PINK1 genes [9, 10]. provided crucial insights into the genetics of PD. Additionally, research in Drosophila melanogaster elucidated the functional interaction between PRKN and PINK1 in a common pathway [52, 55], which is now recognized as a key component of mitophagy. These early studies laid the groundwork for subsequent research on mitophagy and have significantly influenced the development of the field. Although our main analysis focuses on research trends from 2007 onwards to capture recent developments, the seminal contributions of these early studies must be acknowledged.
Research trends and future prospects
In this study, we utilized a nonlinear fitting curve to elucidate the annual publication growth trajectory of mitophagy research in PD. This trend aligns with the theory of scientific development proposed by Derek J. de Solla Price [56], which posits that the volume of scientific literature in a particular field will initially exhibit exponential growth before eventually plateauing. Notably, the inflection point of this growth pattern can be traced back to around 2010, a period during which key breakthrough studies laid the foundation for the subsequent establishment of paradigms. For instance, Narendra et al. revealed the mechanism by which PINK1 accumulates on damaged mitochondria and how this accumulation triggers the recruitment of Parkin and mitophagy [36]. Additionally, the team of Vives-Bauza elucidated how PINK1 and Parkin jointly regulate mitochondrial transport and aggregation, facilitating autophagic degradation in the perinuclear region [41]. These studies provided the molecular framework for the subsequent rapid growth phase of publications. The current surge in publication numbers indicates that the field has established a dominant paradigm and is in the application phase, characterized by the rapid expansion of knowledge and the widespread dissemination of established theories and methods. This period has benefited from recent in-depth research on PD-related mitochondrial dysfunction, such as the discovery of the interaction between α-synuclein and mitochondria[57], as well as technological advancements like CRISPR gene editing [58]. Moreover, policy funding has also been a powerful driving force behind the expansion of this field. By using the search term ("parkinson's disease" AND "mitophagy") to access the official NIH RePORTER database (https://reporter.nih.gov↗), we obtained funding data from 2007 to 2024. The initial funding in 2007 was 5.8 million dollars, which increased to 25 million dollars in 2010 (+ 331%). During the technological breakthrough period from 2011 to 2017, the average annual growth rate was 34.6%, peaking at 853 million dollars in 2017. From 2018 to 2023, during the clinical translation phase, the funding amounts stabilized in the range of 470 to 790 million dollars, reflecting a sustained shift in strategic focus towards therapeutic development. The influence and recognition of scientific literature will accumulate over time and eventually stabilize. As shown in Fig. 2B, the annual publication trend curve for PD-related mitophagy research is flattening. However, these predictions should be treated with caution. Although the nonlinear fitting curve provides robust predictions based on historical data, the dynamic and complex nature of scientific research cannot be overlooked. Actual trends may be influenced by a variety of internal and external factors. External factors include changes in research funding, policy adjustments, or global events, all of which can impact the scientific publication process. Internal factors involve technological advancements in related fields, the evolution of research methods, or shifts in the academic community's research focus.
Global collaboration and regional contributions
The analysis of global research collaboration on mitophagy in PD reveals a dynamic interplay of productivity, influence, and regional specialization.
The United States serves as the central hub of global Parkinson's research collaboration, reflected in its leading publication volume (479), betweenness centrality (0.58), and total link strength (312). Seminal work established the PINK1-Parkin axis: Narendra et al. [36] described PINK1 stabilization on depolarized mitochondria as a critical trigger for Parkin recruitment, complemented by Matsuda [19] showing that PINK1-dependent mitochondrial localization releases Parkin's latent ubiquitin ligase activity. Youle and Narendra [22] synthesized these mechanisms into an evolutionary conserved framework for mitochondrial quality control. Subsequent investigations expanded this paradigm: Chen [45] identified mitofusin 2 (Mfn2) as a PINK1-phosphorylated Parkin receptor, Zhang et al. [59] revealed BNIP3's role in stabilizing full-length PINK1 to facilitate Parkin recruitment, and Harbauer et al. [60] uncovered neuron-specific PINK1 mRNA trafficking via SYNJ2/SYNJ2BP for local mitophagy activation. Regulatory mechanisms were further elucidated by Bingol et al. [61], who characterized USP30 as a deubiquitinase antagonizing Parkin-mediated ubiquitylation, Heo et al.[62] detailing the TBK1-dependent amplification cascade via OPTN/NDP52 recruitment, and Fiesel et al. [63] demonstrating that the PINK1-G411A substitution enhances ubiquitin phosphorylation kinetics and mitophagy efficiency through optimized substrate receptivity. Pathophysiological connections were robustly characterized: Hsieh et al. [64] linked impaired Miro degradation to defective mitophagy in familial and sporadic PD using iPSC-derived neurons, while Grassi et al. [65] identified neurotoxic Pα-syn* aggregates inducing mitochondrial damage and fragmentation that trigger Parkin-dependent mitophagy. These mechanistic insights directly informed therapeutic development: Fang et al. [66] validated that USP30 knockout or pharmacologic inhibition protects dopaminergic neurons in α-synucleinopathy models. While China ranks second in productivity (353 publications), its relatively low betweenness centrality (0.13) and total link strength (102) suggest a focus on domestic or regionally clustered research, indicating a need for deeper integration into global networks. The citation bursts observed in China (2022–2024, strength = 20.96) and India (2022–2024, strength = 14.3) signal shifting dynamics (Fig. 3C). China's surge aligns with its strategic investments in neurodegenerative research. In recent years, Chinese scholars have made significant contributions to elucidating the molecular mechanisms and therapeutic strategies targeting mitophagy in PD. In the context of core regulatory pathways, Wang et al. revealed that PTEN-L acts as a novel phosphatase to inhibit PINK1-Parkin-mediated mitophagy through ubiquitin dephosphorylation [67]. Complementary studies by Huang et al. and Niu et al. further demonstrated the critical roles of metabolic enzymes (PANK2) [68] and deubiquitinating regulators (USP33) [69] in modulating PINK1-Parkin signaling, highlighting the dynamic interplay between ubiquitination and mitochondrial quality control. Regarding mitochondrial dynamics, the Chen team systematically established the involvement of Drp1-mediated fission in paraquat-induced neuronal damage [70, 71], while Han et al. identified PINK1-dependent phosphorylation of Drp1 at Ser616 as a key modulator of mitochondrial morphology [72]. In therapeutic development, Liu et al. reported that lovastatin enhances SHP2-mediated mitophagy to alleviate parkinsonism in murine models [73]. Innovative nanotechnology-driven approaches, such as sequence-targeted lycopene nanodots [74] and single-atom nanocatalytic platforms [75], were designed to promote pro-survival mitophagy and suppress neuroinflammation, respectively. Epigenetic studies uncovered non-coding RNA networks, including the circEPS15/miR-24-3p axis [76] and LncRNA NR_030777 [71], which regulate mitophagy through ATG12 and CDK1 pathways. Notably, Bao et al. proposed a non-canonical mitochondrial quality control mechanism involving mitolysosome exocytosis [77], whereas Zhang et al. and Han et al. elucidated crosstalk between mitophagy and ferroptosis via NKAα1 inhibition [78] and Nrf2-mediated lipid peroxidation regulation [79]. These findings collectively provide a multifaceted framework for understanding PD pathogenesis and advancing mitochondrion-targeted therapies.
India's growth, though starting from a smaller base, reflects rising interest in PD epidemiology and cost-effective therapeutic strategies, such as repurposed mitochondrial enhancers. Annual publication trends (Fig. 3D) further highlight this geographic diversification: the U.S. maintains steady growth, China exhibits exponential output since 2018, and India shows accelerating contributions post-2020.Recent years have witnessed significant progress from Indian researchers in understanding mitophagy regulation and therapeutic applications in PD. By establishing drosophila models, studies revealed that Rab11 modulates mitochondrial quality control through the Parkin/PINK1 signaling pathway [80]. Rodent studies demonstrated that pharmacological inhibition of deubiquitinating enzyme USP14 markedly amplified mitophagic activity and alleviated dopaminergic neurodegeneration [81]. Furthermore, SH-SY5Y cell-based investigations elucidated that andrographolide suppresses NLRP3 inflammasome activation via Parkin-mediated mitophagy [82]. These findings collectively unravel the complexity of mitophagic networks, providing experimental foundations for developing targeted nanodelivery systems and epigenome-modulating strategies.
In Europe, England (170 publications) and Germany (122 publications), demonstrate strong collaboration (total link strengths of 188 and 153, respectively). However, their relatively lower centrality values compared to USA highlight a gap in facilitating cross-regional knowledge exchange. England's key studies include. Ziviani et al. [83] demonstrate conserved PINK1-dependent mitofusin ubiquitination in Drosophila models. Lee et al. [84] challenge prevailing paradigms by documenting persistent basal mitophagy in Pink1/parkin-null organisms, despite progressive PD pathology. Usher et al. [85] further validate non-canonical phospho-ubiquitin turnover independent of autophagy machinery. Essential regulatory components are further defined through Burchell et al. [86] who demonstrate Fbxo7-Parkin interactions critical for mitophagy initiation in PARK15-linked PD, while Martinez et al. [87] identify CISD1 inhibition as a therapeutic strategy to rescue PD-associated mitophagy failure. German research has systematically delineated the regulatory network and pathological mechanisms of the PINK1/Parkin pathway in PD. The Geisler group demonstrated that PD-associated PINK1/Parkin mutations impair mitophagy, leading to accumulation of damaged mitochondria [88]. Meissner et al. identified the mitochondrial protease PARL as a negative regulator that cleaves PINK1 [89], while the Burbulla team revealed that mortalin deficiency triggers mitochondrial proteotoxic stress and activates the unfolded protein response (UPR(mt)), which can be rescued by Parkin/PINK1 overexpression [90]. Mueller-Rischart reported a non-mitophagic function of Parkin, showing it maintains mitochondrial integrity via linear ubiquitination of NEMO to activate NF-κB signaling[91]. Regarding disease progression, Borsche's cohort study established that PRKN/PINK1 mutations induce mtDNA release and cGAS-STING-mediated inflammation, validating serum IL-6 and circulating cell-free mtDNA as diagnostic and progression biomarkers [92], whereas Torres-odio demonstrated in mouse models that PINK1 deficiency drives temporal pathology cascades—from early spliceosome dysfunction and mid-stage ubiquitin–proteasome dysregulation to late neuroinflammation [93]. For therapeutic targeting, Polachova developed PARL-specific ketoamide inhibitors to activate PINK1/Parkin-dependent mitophagy [94], and Roverato proposed inhibiting the inflammation-induced FAT10-Parkin axis to restore mitochondrial clearance [95].
Institutional impact and collaborative strategies
From the perspective of institutional distribution, research on mitophagy in PD exhibits a multipolar pattern, yet with significant geographical concentration. Institutions from North America and Europe dominate the field, with four US institutions ranking in the top ten (National Institute of Neurological Disorders and Stroke[NINDS], University of Pittsburgh, Mayo Clinic, and Johns Hopkins University). Collectively, these institutions account for 51.2% of the total citations among the top ten, with NINDS alone amassing 10,427 citations, thereby underscoring its academic leadership. Among European institutions, University College London (UCL) stands out as a core hub in the global collaborative network, with a total link strength of 128. Its extensive collaborations likely stem from the integration of clinical resources and fundamental research capabilities.
As depicted in the institutional collaboration network (Fig. 4A), institutions such as University College London (total link strength of 128) and the Mayo Clinic (total link strength of 99) occupy core hub positions. Their extensive collaborative ties indicate that the deep integration of clinical and basic research is pivotal in driving the translation of mitophagy research into therapeutic strategies. However, the collaboration network remains predominantly intra-national clusters (e.g.,US and German institutions forming distinct clusters), suggesting that geographical proximity and shared research funding systems may still be the primary drivers of collaboration, despite the global demand for PD research. The increased activity of Chinese institutions in recent years is evidenced by the concentrated distribution of red nodes (representing recent publications) in Fig. 4B. The Chinese Academy of Sciences (CAS, 29 publications) stands as a representative of China's research productivity, ranking sixth globally in terms of publication output. It should be noted that the literature inclusion threshold of VOSviewer (≥ 5 publications) may underestimate the collaborative potential of emerging institutions,as there may be initial collaborations in the actual research network that are not visualized.
For researchers newly entering the field of mitophagy in PD, priority should be given to core institutions with sustained high productivity. For instance, McGill University (with 52 publications) and University College London (with 45 publications) not only maintain stable research output but also their high total link strength (84 and 128, respectively) indicates that their achievements are mostly generated in a collaborative innovation environment. Particular attention should be paid to the 27 publications from the National Institute of Neurological Disorders and Stroke (NINDS), with an average citation per paper reaching 386 times, in order to comprehend the core theoretical framework of the field. Based on the bibliometric analysis results, a multi-dimensional strategy should be adopted when selecting collaborative teams. First, high-link-strength hub institutions should be identified, with priority given to teams with a total link strength greater than 80 and an average annual publication output exceeding five papers (such as University College London and the University of Tübingen). These institutions are characterized by dense node connection lines and spanning multiple research clusters in the collaboration network depicted in Fig. 4A. Second, highly active institutions should be tracked, with a focus on red nodes in Fig. 4B that have an average publication year after 2018, such as the Chinese Academy of Sciences, which has shown a significant fluctuating upward trend in publication output between 2018 and 2022. Finally, the compatibility of international cooperation should be assessed, with teams that have at least five co-authored papers with international partners being selected. It is recommended that new researchers prioritize teams with a total link strength higher than 50 and a record of transnational co-authorship in the past three years when choosing institutions, in order to enhance the visibility and translational efficiency of research outcomes. By integrating the three dimensions of institutional influence, technical complementarity, and cooperation maturity, researchers can systematically optimize their team selection decisions.
Journal distribution and research synergies
The journal analysis shows that mitophagy research in PD is highly concentrated, with 22 core journals (Zone 1) accounting for most publications. Autophagy (IF = 14.3,Q1) stands out with 55 publications, establishing its authority in mitophagy research. Figure 7A maps the core structure of PD mitophagy research. The red, blue, and green clusters are evenly distributed, signifying their equal importance. The red cluster represents molecular neurobiology, the blue cluster focuses on autophagy mechanisms, and the green cluster pertains to PD genetics and pathology. In contrast, the smaller yellow cluster, located between the red and blue clusters, emphasizes PD translational research, serving as a bridge that connects fundamental mechanisms with disease pathology. The yellow nodes, which symbolize elements of translational research, are interspersed throughout the main clusters, underscoring the robust connections between translational research and other critical areas of study.
Notably, top-tier interdisciplinary journals like Nature, despite their relatively low volume of publications (Fig. 7B), often feature breakthrough studies, as indicated by their high average normalized citation rates (deep red nodes). Nature's research on mitophagy in PD has been pivotal in integrating molecular mechanisms, pathological associations, and targeted therapies. Seminal studies include the elucidation of the PARKIN-dependent ubiquitylome in response to mitochondrial depolarization [96], genome-wide RNAi screens identifying regulators of parkin upstream of mitophagy [97], and the role of USP30 in opposing parkin-mediated mitophagy [61]. Structural studies have detailed the activation mechanism of Parkin by phosphorylated ubiquitin [98], the interaction mode of PINK1 with ubiquitin [99], and the mechanism of Parkin activation by PINK1 [100]. These studies have precisely explained the mechanisms of early-onset PD mutations. Research has also expanded into the gut-brain axis, revealing how intestinal infections can trigger neuronal immune attacks via mitochondrial antigens [101]. Cryo-electron microscopy capturing the full activation pathway of PINK1 [102] provides an atomic-level blueprint for targeted interventions. In contrast, high-volume journals like Autophagy focus more on in-depth analysis of mechanistic details, forming a complementary pattern where top-tier journals set the direction and specialized journals deepen the research.
Author productivity and collaborative networks
As shown in Fig. 9, the actual distribution of author productivity significantly deviates from Lotka's Law, with a much higher proportion of authors contributing only one publication (78.6% vs. the predicted 62%). This suggests a large number of short-term participants or interdisciplinary collaborators. This pattern may result from the need to integrate knowledge across multiple disciplines, such as neurodegenerative disease mechanisms, cell biology, and molecular genetics. Additionally, the high average number of co-authors per publication (6.9) suggests a strong collaborative structure, leading to more one-time contributors. Among authors with two or more publications, the actual proportions are consistently lower than Lotka's Law predictions, indicating a highly concentrated core research group in the field.
The research area is marked by a collaborative network centered on key scholars and institutions. Hattori N from Juntendo University and Youle RJ from the National Institute of Neurological Disorders and Stroke (NINDS) have emerged as cornerstones of the field. Hattori N has published 28 papers, which account for a significant proportion of Juntendo University's total publications in this area (totaling 34 papers). His extensive internal collaborations within the university have played a crucial role in shaping the institution's overall contributions to the field. Meanwhile, Youle RJ's work has been highly influential, with a citation count of 12,235. Hattori N's team focuses on the roles of PINK1 and Parkin genes in PD and their functions in mitochondrial quality control. Their studies have revealed that PINK1 phosphorylates the ubiquitin-like domain (Ubl) of Parkin upon loss of mitochondrial membrane potential, promoting Parkin translocation to and activation on mitochondria, thereby triggering mitophagy [103]. They also found that mitochondrial dysfunction caused by PINK1 deficiency is associated with defects in the respiratory chain rather than proton leak [104]. In animal models, Hattori N further confirmed that Parkin deficiency impairs mitochondrial turnover and leads to dopaminergic neuronal loss [105]. Youle RJ's team has elucidated the critical mechanisms of PINK1 and Parkin in regulating mitophagy [36]. They discovered that PINK1 stability is regulated by mitochondrial membrane potential and identified several proteins regulating the PINK1/Parkin pathway, such as TOMM7, HSPA1L, and BAG4 [97]. They also found that Rab protein cycling in the endoplasmic reticulum plays an important role in Parkin-mediated mitophagy [106]. These findings have advanced our understanding of PD pathogenesis and laid a solid foundation for the field. Notably, the institutional distribution shows that McGill University (with Fon EA and Trempe JF) and Mayo Clinic (with Springer W and Fiesel FC) each have two scholars in the top ten. Their total link strengths (184/120 for McGill University and 273/256 for Mayo Clinic) are relatively high, indicating stable and efficient collaborative mechanisms within these institutions.
The co-authorship network map (Fig. 10A) shows a hierarchical structure with scholars like Hattori N, Youle RJ, Springer W, and Fon EA as central hubs. These researchers have published at least 20 papers each and connect multiple clusters, acting as bridges in cross-team collaborations. Emerging peripheral networks represent potential research frontiers, such as new genetic regulators or therapeutic targets. These groups, though currently small, may play a pivotal role in future research and require sustained funding and mentorship to enhance their impact. Figure 11B highlights Youle RJ's dominance through a color gradient of average normalized citations (darker red indicates higher impact). Node colors also reflect differences in research timelines: Fon EA and Trempe JF have redder nodes (more recent publications), while Youle RJ and Springer W have bluer nodes (earlier publications).
Collaboration and institutional support are key to advancing research in this field. While top scholars have made significant contributions, emerging researchers and small teams need support to prevent knowledge gaps. Interdisciplinary integration can improve research efficiency and address the complexity of PD pathogenesis.
Hotspots and frontiers
Core mechanisms and dominant pathways
Keyword analysis in the field of mitophagy in PD reveals dynamic shifts in research paradigms and core scientific questions. Research has consistently focused on the PINK1-Parkin pathway, as evidenced by the high frequency and strong co-occurrence of keywords "PINK1" (494 occurrences) and "Parkin" (357 occurrences). This indicates that the pathway has continuously dominated the research framework since its early discovery and highlights the complexity of its regulatory mechanisms. PINK1 is a mitochondrial protein kinase that accumulates on the outer mitochondrial membrane when mitochondria are damaged or depolarized, recruiting Parkin. Parkin then ubiquitinates damaged mitochondria, marking them for autophagic degradation [48, 50, 96].This pathway is not only involved in mitochondrial quality control but also plays roles in oxidative stress and metabolic regulation [107, 108]. The PINK1-Parkin pathway also interacts with other autophagy pathways, such as those mediated by FUNDC1 and BNIP3L, to maintain cellular metabolic balance [109 –111]. In PD, loss of PINK1 and Parkin function leads to impaired mitophagy, resulting in neuronal damage and death [112].Therapeutic strategies targeting the PINK1-Parkin pathway are emerging as a research focus. Activation of this pathway can enhance mitophagy, improving mitochondrial function and cell survival. For example, certain small molecules have been identified to activate the PINK1-Parkin pathway, promoting mitochondrial clearance and cellular protection [113 –115]. Inhibition of the deubiquitinase USP30 has been shown to enhance Parkin activity, restoring mitochondrial quality [116 –118].
Mitochondrial quality control
The prominence of keywords such as "mitochondria" (rank 5), "mitochondrial dysfunction" (rank 11), and "damaged mitochondria" (rank 18) reflects a paradigm shift in research from a singular focus on autophagy mechanisms to an integrated multimodal quality control network. Mitochondrial quality control (MQC) integrates mitochondrial dynamics (fusion and fission), mitochondrial biogenesis, and mitophagy to maintain mitochondrial integrity and cellular homeostasis [119].
Mitochondrial fission, mediated by Drp1, is a critical step in the autophagy process, facilitating the clearance of damaged mitochondria to maintain cellular health [120]. Studies show that fission and autophagy are closely linked: fission not only provides sufficient mitochondrial fragments for autophagy but also regulates autophagy efficiency through signaling pathways [121]. Inhibition of mitochondrial fission impairs autophagy, exacerbating cellular damage and death [122]. Conversely, mitochondrial fusion, mediated by MFN1/2, delays mitophagy initiation through content mixing, creating a "damage buffering" mechanism. By diluting abnormal signals (e.g.,oxidatively damaged proteins), fusion postpones autophagy [123, 124]. However, MFN2 has been shown to have dual functions in cardiomyocyte injury: it maintains mitochondrial quality through fusion and induces mitophagy by activating Parkin translocation and phosphorylation, clearing damaged mitochondria and protecting cells [125]. Recent studies have revealed that the imbalance between mitophagy and mitochondrial biogenesis is a core mechanism underlying dopaminergic neuronal degeneration. PINK1/Parkin mutations not only impair mitophagy but also inhibit PGC-1α activity through PARIS protein accumulation [126, 127].This dual defect creates a vicious cycle: impaired mitophagy leads to the accumulation of damaged mitochondria, while insufficient biogenesis prevents neurons from compensating with functional mitochondria, ultimately exacerbating oxidative stress and energy metabolic collapse.
α-synuclein
PD is marked by abnormal α-synuclein aggregation, which is key to its pathogenesis. Lurette et al. controlled α-synuclein aggregation using optogenetic tools and found it significantly impacts mitophagy. The aggregates cause mitochondrial depolarization, reduced ATP, fission, and mitophagy via cardiolipin externalization, and lower mitochondrial content in dopaminergic neurons and mouse midbrains. This shows that aggregation, not overexpression, of α-synuclein drives mitophagy and mitochondrial dysfunction, offering new insights into PD [128]. Additionally, the abnormal accumulation of α-synuclein disrupts mitochondrial function and disturbs the dynamic balance of mitophagy, thereby promoting neuronal degeneration [129 –131]. Shaltouki et al. analyzed PD patient brains, neurons, and fly models and found that α-synuclein accumulation upregulates Miro protein levels. Miro, a mitochondrial outer membrane protein, is involved in mitochondrial movement and clearance of damaged mitochondria. In PD neurons, Miro abnormally accumulates on mitochondria, delaying mitophagy. α-synuclein interacts with Miro via its N-terminus, driving Miro upregulation. Reducing Miro levels rescues mitophagy and neurodegeneration. This study underscores the role of mitochondrial-associated α-synuclein in PD and identifies Miro as a potential therapeutic target [132]. Abnormal aggregation of α-synuclein activates the p38 MAPK pathway, phosphorylating Parkin at Ser131 and impairing its function. This disrupts mitophagy, worsening mitochondrial dysfunction and neuronal death in the A53T α-synuclein model. Inhibiting p38 MAPK activity reduces apoptosis, restores mitochondrial membrane potential, and increases synaptic density [133]. Yin et al. showed that Nur77 is key to regulating α-synuclein aggregation and mitophagy using STI571 and antibodies. STI571 inhibits PHB2 Y121 phosphorylation, reduces α-synuclein aggregates, and boosts autophagy. Nur77 moves to mitochondria in the presence of α-synuclein, enhancing PHB-mediated mitophagy and reducing mitochondrial dysfunction. In α-synuclein PFF mouse models, Nur77 overexpression lowers pS129-α-synuclein levels and protects dopaminergic neurons, likely via the p–c-Abl/p-PHB2 Y121 axis. This suggests Nur77 and STI571 could be potential therapeutic targets for PD [134].
The natural compound quercetin upregulates PINK1/Parkin expression, reduces α-synuclein aggregation, and improves mitochondrial quality control in 6-OHDA-induced models [135]. These findings suggest that modulating the balance between mitophagy and α-synuclein aggregation may represent a novel therapeutic strategy for PD.
Neuroinflammation and ferroptosis
The rising trends of "neuroinflammation" and "ferroptosis" (Fig. 12 and 13A) highlight the growing emphasis on the interplay between multiple mechanisms in the field. Mitophagy, primarily mediated by the PINK1/Parkin pathway, is crucial for maintaining mitochondrial homeostasis. Dysfunction in this pathway leads to the accumulation of damaged mitochondria, resulting in mitochondrial DNA (mtDNA) leakage and reactive oxygen species (ROS) accumulation. These changes activate the cGAS-STING signaling pathway and the NLRP3 inflammasome, promoting the release of pro-inflammatory cytokines such as IL-1β and IL-6, and inducing microglial polarization towards the pro-inflammatory M1 phenotype [136 –139]. Targeting mitophagy has been shown to effectively alleviate neuroinflammation. For instance, the natural compound Urolithin A enhances PINK1/Parkin-dependent mitophagy and inhibits NLRP3 inflammasome activation [138]. Similarly, Repaglinide activates mitophagy and modulates endoplasmic reticulum stress, inhibiting glial cell activation and neuroinflammation, thereby reducing dopaminergic neuronal apoptosis [140].
Ferroptosis, a form of iron-dependent lipid peroxidation-driven cell death, is closely intertwined with mitophagy in neurodegenerative processes. ROS accumulation from mitochondrial dysfunction can exacerbate neuronal damage via ferroptosis pathways. For example, neurotoxins like rotenone induce excessive ROS generation, activating ferroptosis markers (e.g.,GPX4 downregulation, COX2 and NCOA4 upregulation) while inhibiting autophagy flux and enhancing mitophagy markers (e.g.,LC3 and p62), ultimately leading to dopaminergic neuronal death [141]. Iron metabolism disturbances, such as iron deposition and transferrin receptor abnormalities, form a vicious cycle with mitophagy dysregulation in disease models. For instance, bifenthrin exposure exacerbates the synergistic effects of mitophagy and ferroptosis by binding to iron transport proteins (Tf) and GPX4 [142]. Additionally, ferritin heavy chain 1 (FTH1) regulation is prominent in 6-OHDA models, where inhibiting ferritinophagy reduces ferroptosis and improves mitochondrial function, suggesting therapeutic potential in targeting iron metabolism and mitochondrial quality control [143]. These findings indicate that mitophagy and ferroptosis are not isolated events in neurodegenerative pathology but form a positive feedback loop through mechanisms involving oxidative stress, iron homeostasis imbalance, and energy metabolism disruption. Future research should focus on elucidating the spatiotemporal regulatory networks between these processes to inform the development of dual-target therapeutic strategies.
Challenges and future directions
Despite the prominence of keywords such as "ubiquitin" (rank 13) and "oxidative stress" (rank 6), which point to numerous potential therapeutic targets, the frequency of terms related to translational medicine, such as "therapeutic targets" and "biomarkers" does not match their scientific importance. This reflects systemic barriers in translating preclinical findings into clinical applications. The mechanisms underlying mitophagy are complex and dynamically balanced, making precise modulation challenging. For instance, although the PINK1/Parkin pathway is extensively studied, most PD patients lack mutations in these genes [144]. Additionally, since PD pathology involves the interplay of multiple pathways (such as α-synuclein aggregation and oxidative stress), targeting mitophagy alone may be insufficient to halt disease progression. Synergistic regulation of other mechanisms (such as mitochondrial biogenesis or anti-inflammatory pathways) is needed, but the complexity and risk of side effects associated with multi-target drug development are significantly increased. Despite the challenges associated with clinical development, small-molecule approaches aimed at selectively enhancing mitophagy, such as USP30 inhibitors and PINK1 activators, are now entering phase I clinical trials [145].
Limitations
Our study provides a comprehensive overview of mitophagy research in PD using bibliometric techniques. However, several limitations are inherent to our approach. Firstly, our dataset is derived solely from the Web of Science Core Collection, potentially omitting relevant articles from other databases. Secondly, our analysis is confined to English-language literature, which may introduce bias [146]. Lastly, the presence of homonymous authors or different expressions of the same author may affect the accuracy of our collaborative network analysis.
Conclusion
Our analysis of mitophagy research in PD from 2007 to 2024 reveals several key findings. The United States is the leading country in terms of publication output, followed by China. McGill University is the most prolific institution, while the journal Autophagy is the most frequent publication venue, with International Journal of Molecular Sciences ranking second. Hattori Nobutaka, is the most prolific author, followed by Edward A. Fon. Research foci include "pink1/parkin", "mitochondrial quality control" and α-synuclein, with neuroinflammation and ferroptosis emerging as hotspots. These findings provide a comprehensive overview of the field, highlighting critical insights into current research trajectories. We anticipate that these insights will help researchers better understand prevailing trends in mitophagy research in PD and guide future investigative endeavors.
Supplementary Information
Additional file 1: Mapping the Global Research Landscape of Mitophagy