Nature communications

Using a protein-DNA language model to design precise and small adenine base editors

Updated

Abstract

Essence

A protein-nucleic acid language model helped design a smaller, more precise adenine base editor with strong activity in preclinical systems.

Evidence

Protein-engineering experiments produced PNLM-pcABE, a 27% smaller ABE8e variant with a 3-nt editing window, near-background off-target events in HEK293T cells, up to 133.5-fold precision improvement for pathogenic mutation correction, efficient zygote editing in albino mice, and reduced PCSK9 expression after LNP delivery in mice.

Caveat

The results come from cells, zygote editing, and mouse delivery experiments, so therapeutic performance and safety in humans are not established.

Simplified

Key numbers

133.5×
Precision Improvement
Precision improvement of -pcABE compared to ABE8e.
27%
Size Reduction
Size reduction of -pcABE compared to ABE8e.
100%
Mutation Success Rate
Success rate of desired mutations in albino mouse models via microinjection.

Full Text

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Funding

Competing interests

Competing interests: X.Z., J.R., Y.N.L., Z.Z., and J.W. have submitted patent applications (application no. 202311487517.3, under review) based on the results reported in this study. This patent mainly relates to PNLM-pcABE in this paper. The remaining authors declare no competing interests.
PubMed

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