A specific and ultrasensitive Cas12a/crRNA assay with recombinase polymerase amplification and lateral flow biosensor technology for the rapid detection of Streptococcus pyogenes

Sep 10, 2024Microbiology spectrum

Highly sensitive test using Cas12a and DNA amplification for quick detection of Streptococcus pyogenes

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Abstract

A visible outcome can be observed within 33 minutes using a novel CRISPR-Cas12a detection method.

  • The detection method incorporates sample processing, recombinase polymerase amplification, and a lateral flow biosensor for rapid results.
  • The limit of detection for the fluorescence-CRISPR-assay is 1 copy/μL.
  • This technique demonstrated high specificity in differentiating between various strains of bacteria.
  • Results are presented in a user-friendly format, allowing for easy interpretation.
  • The method is robust, inexpensive, and suitable for on-site testing.

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Key numbers

1 copy/μL
Limit of Detection for Fluorescence-CRISPR-assay
Minimum concentration detectable by the assay
10 copies/μL
Limit of Detection for LFB-CRISPR-assay
Minimum concentration detectable by the LFB-CRISPR-assay
33 min
Detection Time
Total time from sample processing to result

Full Text

What this is

  • A novel detection method for Streptococcus pyogenes was developed using CRISPR-Cas12a technology combined with recombinase polymerase amplification (RPA) and lateral flow biosensor (LFB) technology.
  • This method allows for rapid and sensitive identification of the pathogen, addressing limitations of traditional diagnostic techniques.
  • The assay can provide results within 33 minutes, making it suitable for point-of-care testing.

Essence

  • The study presents a rapid and sensitive Cas12a/crRNA assay for detecting Streptococcus pyogenes, achieving results in 33 minutes with high specificity and sensitivity.

Key takeaways

  • The assay detects S. pyogenes with a limit of detection (LoD) of 1 copy/μL for the fluorescence-CRISPR-assay and 10 copies/μL for the LFB-CRISPR-assay.
  • The method demonstrated high specificity, effectively distinguishing S. pyogenes from various other pathogens in clinical samples.
  • Clinical validation showed that the LFB-CRISPR-assay results were consistent with Real-time PCR, confirming its diagnostic performance.

Caveats

  • The method is prone to cross-contamination, which could affect results. Achieving a true one-pot reaction remains technically challenging.
  • Further evaluation with more clinical specimens is needed to fully assess the assay's specificity and sensitivity.

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