Proceedings of the National Academy of Sciences of the United States of America

Histone changes as reliable markers to predict biological age across species and understand aging control

Updated

Abstract

36 tissue-specific epigenetic clocks were developed based on histone modifications, demonstrating strong resilience to technical and biological noise.

  • Histone modifications may provide a more effective approach for predicting biological age compared to traditional DNA methylation-based methods.
  • The clocks were validated using publicly available datasets across six tissue types and six histone marks, showing performance similar to established DNA methylation clocks.
  • Biological age acceleration was detected in leukemia samples, and age reversal was observed following therapeutic interventions.
  • Many aging-associated loci exhibited nonlinear changes, with peak modification levels occurring at midlife, indicating complex dynamics in epigenetic aging.
  • Age-related fragmentation of super enhancer regions suggests increasing chromatin disorganization as organisms age.
  • Histone-based clocks were also applicable in species lacking DNA methylation, indicating their evolutionary conservation as aging biomarkers.

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Funding

Competing interests

Competing interests statement:The authors declare no competing interest.
PubMed

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