Scientific reports

Moving UGI within Cas9 lowers unwanted DNA changes in cytosine base editors

Updated

Abstract

Relocating the uracil DNA glycosylase inhibitor (UGI) within the Cas9 nickase architecture significantly reduces off-target activity while maintaining on-target editing efficiency.

  • Cytosine base editors (CBEs) convert cytosine to thymine with the aid of uracil DNA glycosylase inhibitor (UGI) and Cas9 nickase.
  • Classical CBEs demonstrate strong on-target activity but also exhibit considerable off-target effects associated with Cas9.
  • Internal fusion of UGI within the nCas9 structure was implemented as a strategy to improve editing fidelity.
  • This reorganization maintains comparable on-target editing efficiency while effectively minimizing off-target activity.
  • The findings indicate a new engineering approach for developing high-fidelity CBEs suitable for genome editing.

Simplified

Key numbers

20 of 23
Efficiency
YE1--X variants achieving > 50% conversion at HEK4 target.
21 of 23
Reduced
YE1-2A--X variants compared to the control.

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