What this is
- The review discusses the role of in cancer immunotherapy, particularly its interaction with ().
- It explores how can influence the efficacy of treatments targeting PD-1 and PD-L1.
- The potential of as biomarkers for predicting immunotherapy responses is also examined.
Essence
- can enhance the effectiveness of cancer immunotherapy by interacting with . Specific microbial compositions may serve as biomarkers for predicting patient responses to these therapies.
Key takeaways
- can modulate the immune system's response to cancer therapies. The composition of affects the efficacy of , such as PD-1 and PD-L1 blockers.
- () has shown promise in normalizing , potentially improving immunotherapy outcomes. This approach may help enhance systemic and antitumor immune responses in cancer patients.
- Certain beneficial microbial species are associated with improved responses to immunotherapy. The presence of specific correlates with better overall survival and progression-free survival rates in patients undergoing treatment.
Caveats
- The review acknowledges limitations in understanding the precise mechanisms by which influence immunotherapy responses. Further research is needed to clarify these interactions.
- Antibiotic use can disrupt , leading to dysbiosis and reduced effectiveness of immunotherapy. This highlights the need for careful management of antibiotic treatments in cancer patients.
Definitions
- gut microbiota: The diverse community of microorganisms residing in the gastrointestinal tract, influencing health and disease.
- immune checkpoint inhibitors (ICIs): Therapeutic agents that block proteins preventing immune system activation against cancer cells, enhancing antitumor responses.
- fecal microbial transplantation (FMT): A procedure that involves transferring fecal matter from a healthy donor to restore gut microbiota in a recipient.
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INTRODUCTION
The human gut microbiome is composed of a complex community of microbes, approximately 1013â1014 cells, which plays critical task in disease and health status.1 The intestinal microbiota consists of different microorganism types including archaea, bacteria, viruses, fungi, and protozoa that live on and inside various humansâ organs.2, 3 Different physiological acts can be attributed to gut microbiome, particularly inflammation, metabolism and immunity.4, 5
The immune system exploits different effector responses, cells and factors to eliminate pathogenic microbes and cancerous cells.Notably, gut microbiota destruction, identified as âdysbiosis,â has been correlated with a number of inflammatory conditions. 43694 43694
Intestinal dysbiosis of healthy gut microbiota results in deterioration of mutualistic relationship and may associate with many diseases like metabolic syndrome, type 1 and type 2 diabetes, obesity, inflammatory bowel disease (IBD), irritable bowel syndrome (IBS), different types of cancers particularly gastrointestinal (GI) cancers (Table 1).7, 8
Through changes in the intestinal lumen, certain commensal microbiota can quickly proliferate and acquire pathogenic features, such as vancomycinâresistant Enterococcus or Clostridium difficile.9, 10 Gut microbiome complies all the prerequisites for representation as an endocrine body structure due to its plasticity and capability of producing various biologically functional components.11, 12 These metabolic byâproducts and biologically active compounds like hormones that are released from this soâcalled endocrine organ may circulate and disseminate to other body sites, and affect different pivotal biological procedures.11 Recent evidence strongly supports the important role of gut microbiota as a new therapeutic option in cancer treatment.13 Moreover, gut microbiota and their released metabolites have profound impacts on the development and response of peripheral immune system, and also it was demonstrated that can improve the therapeutic effectiveness of immune checkpoint inhibitors (ICIs) against cancerous cells.14, 15 Herein, we aimed to review the relationship between gut microbiota, host immune response and cancer immunotherapy, with a focus on the interaction of gut microbiota and ICIs. Also, we brought up the related pitfalls and challenges that may potentially affect the therapeutic capacity of microbiota in cancer immunotherapy. Furthermore, we discussed the possible role of chronic infections or inflammation that may interfere with cancer immunotherapy.
| Implicated microbiota | Type of cancer | Mode of action | Ref. |
|---|---|---|---|
| âHelicobacter pylori | Gastric cancer | Causing gastric infection Developing premalignant lesions Gastric atrophy, intestinal metaplasia, and dysplasia | 16 |
| âFusobacterium nucleatum | Colon cancer | Expanding myeloid derived immune cells in tumor microenvironment Mediating inflammation Resist in hypoxic tumor microenvironment and replicate Consumption of peptides in tumor environment to produce amino acid metabolites such as phenylalanine, methionyl, and formyl Activating Wnt/βâcatenin pathway and cell proliferation | ,, 7 17 18 |
| âStreptococcus gallolyticus | Colon cancer | Enhancing inflammation and cell growth Contributing to overexpression of cyclooxygenaseâ2 (PTGS2) during cancer Preventing apoptosis and promotion angiogenesis | , 7 17 |
| âEnterococcus faecalis | Colon cancer | Production of reactive oxygen species (ROS) to cause DNA damage Induction of chromosomal instability Producing extracellular superoxide anions as risk factors for colorectal carcinogenesis | , 7 17 |
| (ETBF) âEnterotoxogenic Bacteroides fragilis | Colon cancer | Cleavage of tumor suppressor protein Enhancing nuclear Wnt/βâcatenin signaling Enhancing cell growth and expression of câMyc protoâoncogene Induction of NFâkβ signaling and promoting secretion of cytokines from colon epithelial cell (CEC) Enhancing mucosal inflammation and CEC carcinogenesis | , 7 17 |
| GenotoxicâEscherichia coli | Colon cancer | Inducing double strand DNA breaks using the polyketide synthase () island by colibactinpks | , 7 17 |
| âPorphyromonas gingivalis | Pancreatic cancer | Production of peptidylarginine deiminase (PAD) enzymes that can degrade arginine and result in Kâras and p53 mutations | 18 |
| spp.âClostridium | Liver cancer | Inhibiting accumulation of hepatic natural killer T cells (NKT) Suppressing antitumor immunity against both primary and secondary liver tumors | 19 |
Gut microbiome and host immune system
Recent studies have suggested critical roles for the gut microbiome in the educating and development of major players of the host immunity through a complex microbiotaâimmunity crosstalk in both homeostatic conditions and diseases.,These multifaceted dialogs not only authorize the immunological tolerance of commensal bacteria, but also enable the host immune cells to identify and begin an assault against microbial pathogens. Disturbance in the gut microbiome equilibrium is termed dysbiosis, which can result in considerable alterations in the taxonomical composition as well as the metagenomic functions of the gut microbiota and induce the overgrowth (blooming) of otherwise less abundant or potentially deleterious microbiota such as pathobionts.,,Once the dysbiosis occurred, it can directly or indirectly result in functional impairment of local, locoregional, and systemic immune responses leading to disintegration of epithelial barriers, and subsequently delivery of mucosaâassociated microbes and their components into the mesenteric lymph nodes (MLNs) and into the peripheral circulation.Moreover, dysbiosisâassociated inflammation can recruit neutrophils to the intestinal epithelium, alter the inflammatory cytokine and chemokine profiles, activate the T helper 17 (Th17) and effector T cells, which in turn may cause a negative feedback control of the gut microbiota.,, 43694 43694 43694 43694 43694 43694 43694 43694 43694
It has been well established that intestinal microbiota remarkably modulates and controls the development and operation of both the innate and adaptive immune systems. The microbial components and biomolecules, called microbeâ or pathogenâassociated molecular patterns (MAMPs or PAMPs), and also their sensors named pattern recognition receptors (PRRs), are the key players which mediate the conversation between microbiota and host innate immune cells such as monocytes/macrophages, dendritic cells (DCs), and natural killer (NK) cells.,, 43694 43694 43694
In homeostatic conditions, the immune system orchestrates tolerance to beneficial intestinal microbiota such as Bifidobacterium and Lactobacillus species, while strongly reacts against the virulent microorganisms and opportunistic pathogens or pathobionts mainly through induction of the profound proâinflammatory responses.31, 32, 33, 34 Hence, there is a natural and prudent immunosurveillance system in the intestinal lumen which carefully monitors the microbial communities for maintaining the hostâmicrobiota mutualism and host defense. Moreover, normal intestinal flora can generate and synthesize various immunomodulatory compounds and metabolites such as shortâchain fatty acids (SCFAs) like propionate, acetate, and butyrate, and also secondary bile acids and ubiquitous bacterial fermentation products.12, 35 Of note, SCFAs act as effective inhibitors of histone deacetylases (HDACs) and lysine deacetylase (KDAC) in innate immune cells such as macrophages and DCs.36, 37, 38, 39 Furthermore, these bioactive agents are capable to interact with the overâmentioned receptors on the immune cells and adjust their size, metabolic processes and functions which may result in host health benefits.32, 40 Thus, understanding the involved mechanisms behind the interactions between gut microbiome and immune system can be utilized to design and develop novel therapies to treat immuneâmediated and immuneâassociated diseases.
Gut microbiota and NK cells
NK cells are key players of the innate immune system, and are characterized by the surface expression of marker CD56 and the lack of CD3 expression.This group of innate immune cells represents a heterogeneous subset of large granular lymphocytes, and constitutes nearly 5%â20% of all peripheral lymphocytes which are engaged in the clearance of virusâinfected cells and lysis of tumor cells.,,Beside their cytotoxic effector functions, NK cells are significantly involved in regulating the immune response by producing several cytokines and chemokines, mainly interferonâÎł (IFNâÎł) and tumor necrosis factor (TNF)âÎą upon stimulation, to modulate other types of cells related to both the adaptive and innate immune responses.,,It has been shown that NK cells are not normally active killers but rather require to be completely activated in a process known as NK cell priming. 43694 43694 43694 43694 43694 43694 43694 43694
Regarding the prominent function of NK cells in the biology of cancer, they obviously represented as forthcoming immunotherapeutic targets for the treatment of different malignancies, and a rising number of studies and ongoing clinical trials support the use of various therapeutic agents that target NK cellârelated pathways as cellâbased cancer immunotherapies.,The continuous existence of metabolites/products/ligands (e.g., LPS, peptidoglycan, SCFAs, and AhR ligands) originated from gut microbiota can induce the differentiation and activity of myeloid (monocytes/macrophages) lineage, including NK cells, and bone marrow progenitors, and also various groups of innate lymphoid cells (ILCs) through interacting with PRRs.,,Totally, NK cells play a critical role in response to gut microbial invasion, mainly via secretion of IFNâÎł, which can provoke recruitment of further NK cells from peripheral blood to augment the antimicrobial immune responses.These immune cells encounter a great number of antigens derived from commensal or potentially pathogenic microbes or pathobionts shaping the gut microbiome. Moreover, the crosstalk between NK cells and gut microbiota can lead to induction of adaptive T cellâmediated immunity through interacting with professional antigen presenting cells (APCs) such as DCs.,It is also suggested that NK cells can evoke an intestinal inflammatory response during microbial invasions in the gut, which is irrespective of viral and tumor elimination. Also, these innate cells can exploit different tollâlike receptors (TLRs) to interact with various bacterial components like PAMPs, MAMPs, LPS, peptidoglycans, viral dsRNA, and DNA with CpG motifs to elicit inflammatory responses. 43694 43694 43694 43694 43694 43694 43694 43694 43694
NK cells have crucial roles in early defense against viral infections and a variety of tumors, and are involved in DC maturation, indicating a DCâNK interplay which is of vital significance in antitumor immunity, and emphasizes the rationale for inspecting this crosstalk in the expansion of more efficacious cancer immunotherapies.55, 56, 57 On the contrary, certain strains of gut microbiota have been observed to modulate gutâassociated lymphoid tissue (GALT), enhancing the functional capability of innate immune response, activating DCs, and promoting NK cells though a direct cytochemical pathway by pathogens which invade the epithelial layer of the host gut.42, 52 It has been documented that NK cell priming and antiviral immune response were seriously compromised in germâfree (GF) mice, which suggests that the presence of commensal microbiota is required to calibrate the function and priming of NK cells in GF mice.47 Furthermore, lactic acid bacteria (LAB) have been demonstrated to have considerable impact on maturation of DCs, therefore, activating NK cells.58 It has been shown that some strains of gutâderived interleukin (IL)â12âinducing LAB can stimulate various subsets of DCs such as blood DCs and lymph node (LN) DCs, and activate NK cells to secrete IFNâÎł.42, 59, 60 Also, certain strains of probiotic bacteria that originated from a healthy gut microbiome, in particular lactobacilli and bifidobacteria, were reported to be involved in activation of NK cells, their functionality and cytotoxicity as a result of DCâNK interplay.42, 61, 62 Taken together, these observations should represent a convincing rationale to explore the ligandâreceptor interactions between NK cells and healthy gut microbiota, which can be exploited as innovative targeted immunotherapies to help those with different conditions of intestinal inflammatory diseases associated with the gut immune system.
Role of oncomicrobes in cell proliferation and cancer initiation
Oncomicrobes contain microorganisms that induce direct DNA mutations and change host cellular signal transduction pathways. Until recently, oncomicrobes were mostly recognized to be viral agents such as human papillomavirus (HPV) that integrate their oncogenes inside the genetic content and frequently target the genes associated in various cancers.63 However, a few numbers of microbes are known as true oncomicrobes partially because of restrictions in recognizing microorganisms as irregular causes of cancers. The responsible microorganism may be depleted in the cancerous locations because it may have launched cellular injury via a âhitâandârunâ strategy after a quick exposure to host cells.63, 64 In spite of lacking sufficient information associating cancer with specific bacterial species, various direct, and indirect plans are proposed by which they can induce different carcinogenesis pathways. Certain microbial species have evolved competitive approaches that contain the capacity to cause DNA damage of competing microorganisms. Also, such strategies can change host DNA material by forcing genetic alterations that may be involved in tumorigenesis. In addition, microbial DNA may be inserted into the host cellular genomes, especially the mitochondrial genetic content, via RNA intermediate molecules. These events occur mostly in cancerous tissues than normal adjacent tissues.63 Certain bacterial proteins are documented to induce signaling pathways involved in the host cellular cascades that modulate cell proliferation and stemness. For instance, Wnt/βâcatenin pathway, is aberrantly regulated via components generated by a number of bacteria, consisting of Salmonella typhi, Fusobacterium nucleatum, and Helicobacter pylori.7, 63, 65 DNA damage may also occur by bacterial toxins. For example, Escherichia coli producing colibactin, a newly identified substituted spirobicyclic molecule, induces crosslinking of doubleâstranded DNA,66, 67 and cytolethal distending toxin (CDT) expressed by Ćšâ and Îłâproteobacteria, demonstrates DNase activity and can directly induce DNA breaks68 (Figure 1).

Schematic illustration of hostâmicrobiome interplay as potential trigger of gastrointestinal (GI) cancer. The mechanisms underlying the effects of certain gut microbiota and microbiomeâderived toxins and metabolites as potential triggers of GI tumorigenesis are described. Moreover, a series of pathways and process of carcinogenesis by which the gut microbiota may be involved in the genesis and development of GI tumorigenesis are depicted in the picture and mentioned in this review
CANCER IMMUNOTHERAPY
Cancer immunotherapy has recently attracted a great attention in the next era of cancer treatment. This new therapeutic strategy employs the host immune system to render antitumor effects against cancerous cells.Recently, ICIs are introduced as promising immunotherapeutic biomolecules, which have shown hopeful clinical outcomes in treatment of various cancers, as shown by monoclonal antibodies (mAbs) blocking cytotoxic Tâlymphocyte antigenâ4 (CTLAâ4), programmed cell death ligand 1 (PDâL1) and programmed cell death protein 1 (PDâ1).,However, development of primary and acquired resistance throughout the duration of treatment period may decrease the ubiquitous clinical use of ICIs.Of note, selection of appropriate cases is critical to prevent subsequent resistance to such drugs and increase the efficacy of ICIs.Thus, robust attempts to combat the resistance to immunotherapy are extremely required. 43694 43694 43694 43694 43694
It was observed that tumor cells expressing PDâL1 induced apoptosis of coâcultured activated effector T cells, and this process was inhibited by an antihuman PDâL1 mAb.,In addition, the growth of murine tumors expressing PDâL1 was blocked in syngeneic mice by the antimurine PDâL1 mAb. Furthermore, similar findings were achieved through the examination of a variety cancer cells using animal models.,,These important findings opened the way to run several clinical trials exploiting mAbs targeting PDâ1, PDâL1, and CTLAâ4 in cancer immunotherapy for different kinds of cancers. Presently, the U.S. Food and Drug Administration (FDA) have authorized the consumption of some mAbs including: cemiplimab (Libtayo), pembrolizumab (Keytruda), avelumab (Bavencio), atezolizumab (Tecentriq), durvalumab (Imfinzi), and nivolumab (Opdivo) for targeting PDâ1 and PDâL1 in cancer immunotherapy.,,Also, ipilimumab (Yervoy) that targets the CTLAâ4 was demonstrated to function synergistically with nivolumab to induce Tâcell antitumor activity in melanoma and small lung cell carcinoma.Despite the obvious efficacy of PDâL1, PDâ1, and CTLAâ4 suppression in cancer therapy, not all patients responded to these treatments. Therefore, practical strategies to enhance the effectiveness of cancer immunotherapy are demanded., 43694 43694 43694 43694 43694 43694 43694 43694 43694 43694 43694
Interaction of PDâ1 and PDâL1 in tumor microenvironment
In anticancer immunity, the immune system recognizes the tumorâspecific antigens expressed through gene mutations, and specific CD8+ cytotoxic T lymphocytes (CTLs) are recruited to the sites of tumor targeting the corresponding antigens.83 This certain cluster of effector CTLs identify the target tumor cells and induce programmed cell death of cancerous cells. Surprisingly, cancerous cells exploit different tactics to escape immune surveillance. For instance, they resist neutralizing effects of the antitumor CTLs by enhancing the expression level of PDâL1 in tumor ecosystem.75, 84 Healthy host cells normally do not produce noticeable level of PDâL1 on their surfaces, while PDâL1 is significantly produced by tumor cells, immune, and nonimmune cells.6, 85 Interferon gamma (IFNâÎł) cytokine that is secreted by the infiltrating antitumor CTLs into tumor microenvironment, plays a key role in induction of PDâL1 expression.85, 86 Moreover, some other cytokines like ILâ4, ILâ10, and TNFâÎą can also upregulate the PDâL1 expression.87, 88 The interplay between PDâ1 and PDâL1 in tumor ecosystem capacitates the tumor cells to withstand the endogenous antitumor functions excreted from the host immune response.87 The interaction of PDâL1 in tumor tissues with expressed PDâ1 on the activated T cells impairs the normal functions of effector T cells via multiple strategies, like induction of T cell programmed cell death, exhaustion, and anergy.6, 69, 85, 86 Recently, it was shown that crosstalk of PDâ1 with PDâL1 expressed on tumorârelated macrophages prohibits the phagocytic capacity of macrophages against tumor cells.89 The significance of PDâ1 and PDâL1 interplay in cancer cell escape promoted the utilization of such biomolecules as prominent therapeutic agents in immunotherapy of cancer.87, 88, 89
Gut microbiome and immunotherapy responses
Today, growing evidence has revealed that gut microbiome can play a key role in the modulation of immunotherapy responses in patients under treatment by immunotherapeutic drugs such as ICIs.90, 91, 92 The host response to ICIs, PDâ1/PDâL1 blockade or CTLAâ4 inhibition, could be affected by the composition of intestinal microbiome.93, 94, 95 Upon PDâ1/PDâL1 inhibition, mice with various intestinal microbial compositions have been shown to exert different responses to the anticancer immunotherapy.93 Gut microbiota analysis depicted that bifidobacteria were enhanced in mice with slow tumor growth, and exhibited promising responses to antiâPDâ1 therapy. These favorable influences from mice having a more beneficial microbiome may be transported to other mice through fecal microbial transplantation (FMT).92 FMT is an effective strategy to normalize the intestinal microbiota which has already been employed in various clinical indications such as IBD, IBS, multiple sclerosis (MS), different type of cancers, and particularly in treatment of recurrent Clostridioides (formerly, Clostridium) difficile (rCDI) infection that do not response to conventional antimicrobial therapies.96, 97, 98, 99, 100, 101, 102, 103 FMT is defined as a therapeutic procedure that involves transplantation of the entire intestinal microbiota from a healthy donor into the intestinal tract of a patient to completely rebuild and normalize the structure and functionality of gut microbiome.104, 105, 106 In recent years, FMT also has attracted great interest to be applied along with cancer immunotherapy for solid tumor malignancies, specifically for improving the efficacy of ICIs.92 Together, due to enhancing the systemic and antitumor immune response in cancer patients, FMT could be administrated as a dramatic tool for the treatment of patients receiving ICIs.
Furthermore, the antitumor activity of PDâL1 inhibition was increased when mice having an unpleasant gut microbiota were provided with oral probiotics containing Bifidobacterium bacteria.107 Such effects mostly arose from the maturation induction of dendritic cells DCs that lead to enhancement of cellular function of the tumorâspecific CD8+ T cells.107 Following CTLAâ4 blockade treatment, the richness of intestinal microbiota clearly differed in mice, as indicated by the relative enrichment of Burkholderiales and Bacteroidales and reduction of Clostridiales.93 Furthermore, mice oral feeding with Bacteroides thetaiotaomicron, Bacteroides fragilis, and Burkholderia cepacia increased the effectiveness of antiâCTLAâ4 treatment by inducing T helper 1 (Th1) response and improving DC maturation. Nevertheless, consumption of broadâspectrum antimicrobials in GF and specificâpathogenâfree (SPF) mice significantly reduced the activity of antiâCTLAâ4 treatment. This effect might be restored via FMT from individuals having predominant species of Bacteroides.93
Recent investigations have also confirmed the significance of intestinal microbiome in improving the effectiveness of cancer immunotherapy.69, 92 With PDâ1/PDâL1 blockade therapies, the overall survival and the progressionâfree survival (PFS) rates were significantly elevated in cases with epithelial tumors whom did not consume antimicrobials for routine purposes compared to cases with tumor that received antibiotics.108 This phenomenon declares that antibiotic usage may cause intestinal dysbiosis, hence, hindering the antitumor immunity and immune checkpoint blockade responses. Data obtained from the comprehensive metagenomic sequencing of fecal specimens from such cases demonstrated that responder participants to antiâPDâ1 treatment had various compositions of intestinal microbiota, which were enriched in Alistipes and Akkermansia.69 Before PDâ1 blockade therapy, FMT was exploited in GF mice using fecal samples from responder donors that strengthened the immunity, while immune response of GF mice taking FMT from nonresponder donors was restored using Akkermansia muciniphila alone or in combination with Enterococcus hirae.69 Importantly, A. muciniphila was associated with enhanced infiltration of immune cells in tumor sites as CCR9+CXCR3+CD4+ T cells were migrated to the site of tumor, and CD4+ T cells to CD4+FoxP3+ T cells (Tregs) ratio was elevated.91, 107 In subjects with metastatic melanoma, the gut microbiome diversity was remarkably enhanced in responder cases to PDâ1 blockade treatment, and specific bacterial species were relatively more enriched, like Faecalibacterium, Ruminococcaceae, and Clostridiales.63, 66 However, nonresponder patients had less diverse population of gut microbiota and higher abundance of Bacteroidales.92 Analysis of the intestinal microbiome composition and the immunological patterns in the cancerous tissue showed that the expression of specific markers of cytotoxic T cells and antigen display were enhanced in individuals with beneficial intestinal microbiome in comparison with subjects having inappropriate gut microbiome.92 It was reported that tumor microenvironment of cases who responded to antiâPDâ1 was abundant in Collinsella aerofaciens, Bifidobacterium longum, and Enterococcus faecium.70 Moreover, transfer of responder fecal specimens to GF mice positively reproduced the dominant phenotype, lower rate of tumor growth and promoted therapeutic impacts compared with mice that received nonresponder fecal samples. Consequently, these restorations of gut microbiota led to a rise in the overall population of CD8+ T cells and a reduction in Tregs in the tumor site.95
COMMENSAL MICROBIOTA AS POTENTIAL CONTROLLER OF CANCER IMMUNOTHERAPY
Beneficial microbiota
Results obtained from metagenomic studies using 16S ribosomal RNA (16S rRNA) sequencing revealed that Bifidobacterium adolescentis, Bifidobacterium breve, and Bifidobacterium longum were associated with increased efficacy of drugs used for cancer immunotherapy.6, 107 The function of these microbes in increasing defensive immune responses against tumors were subsequently evaluated by administering mice having solid tumors with B. longum and B. breve cocktail via oral feeding.107 In this experiment, Bifidobacteriumâtreated mice demonstrated significant improvement in controlling tumor outgrowth as compared to untreated mice. It is hypothesized that Bifidobacterium cocktail can cooperate with immune checkpoint blockade to promote and activate antitumor immunity as depicted in Figure 2. Since Bifidobacterium species enhanced the antiâmelanoma effects by induction of innate immunity, the application of Bifidobacterium cocktail against tumor growth can be expanded to other types of cancers. Some of the typical bacterial species and viral agents that have been proposed to be positively or negatively linked to antiâPDâ1 and antiâPDâL1 therapies are presented in Table 2.
Recently, another study examined the fecal specimens of metastatic melanoma cases prior to PDâ1 blockade cancer treatment, and demonstrated that abundance of C. aerofaciens, E. faecium, and B. longum were higher in the PDâ1 blockade immunotherapy responders, underpinning the antitumor actions of such microbes.70 Also, Frankel et al. proved that patients bearing melanoma who responded to ICIs were populated with Bacteroides caccae.95 Moreover, they presented that the kind of bacterial species which are increased within responders are most probably to be associated on the type of antibodies used against cancer immunotherapy. The gut microbiota of cases who responded to nivolumab (targeting PDâ1) were abundant with Holdemania filiformis, Faecalibacterium prausnitzii and Bacteroides thetaiotaomicron, while cases who responded to pembrolizumab (targeting PDâ1) were populated with Dorea formicogenerans. Nevertheless, the exact mechanisms behind these alterations are not well understood.95 Wargo et al. examined the human gut microbiome in participants with PDâ1 blockade therapy by whole genome shotgun sequencing and 16S rRNA metagenomics, and discovered that composition and diversity of bacteria in participants who responded to the immunotherapy were notably varied from that in participants who did not respond to the immunotherapy. The responders showed more diverse bacterial composition and higher number of Clostridiales, while the nonresponders were enriched with Bacteroidales.109 In another study, the effects of gut microbiome in antiâPDâ1 therapy were investigated in patients bearing different cancers consisting of lung cancer, urothelial carcinoma, and renal cell carcinoma. They showed that cases who received antimicrobials prior or soon after beginning the antiâPDâ1 treatment had diminished rate of survival, unless responders were enriched by A. muciniphila. They also observed that administration of A. muciniphila to SPF or GF mice was capable to rebuild the antitumor effects of antiâPDâ1 therapy which was prevented by antibiotic usage.69 However, the precise mechanisms by which A. muciniphila enhances antiâPDâ1 immunotherapy needs to be clarified.

The putative effects of commensal microbiota on cancer immunotherapy. Certain beneficial microbial species are known to have a range of effects on host antitumor immune responses, and cancer immunotherapy.cocktail cooperates with immune checkpoint inhibitors (ICIs) blockade to promote and activate antitumor immunity. The identification of such cooperative mechanism may provide a novel and promising prospect for probioticâbased therapies that could be integrated with cancer immunotherapy to ameliorate patient outcomes and even convert nonresponders Bifidobacterium
| Microbiota | Main effects on immunity | Potential effect on immunotherapy | Ref. |
|---|---|---|---|
| Beneficial microbiota | Enhanced the antitumor efficacy of PDâL1 blockade, enhancement of DC maturation, improving activity of the tumorâspecific CD8T cells, increased IFNâÎł production+ | Effective | , 90 107 |
| Bifidobacterium | |||
| ,,Bacteroides fragilisBacteroides thetaiotaomicronBurkholderia cepacia | Increased the efficacy of antiâCTLAâ4 therapy by inducing Th1 response and promoting DC maturation, an increase in CD8T cells and a decrease in Tregs in the tumor environment+ | Effective | 93 |
| Akkermansia muciniphila | Enhanced the infiltration of immune cells in tumor site, as CCR9CXCR3CD4T cells were recruited to the tumor microenvironment and the ratio of CD4T cells to CD4FoxP3T cells (Tregs) was enhanced++++++ | Effective | 69 |
| Enterococcus hirae | Enhanced ILâ12 secretion by DCs | Effective | 110 |
| Harmful microbiota | Increased host PDâ1 and PDâL1 expression, higher level of proâinflammatory cytokines (TNFâÎą), suppressed the proliferation of CD4+ T cells, the inhibitory effect can be blocked using antibodies PDâL1 | Ineffective | 111 |
| Helicobacter pylori | |||
| HBV, HCV, HPV, EBV | Established chronic infections in humans and increased host PDâ1 or PDâL1 expression | Ineffective | 6 |
Harmful microbiota
In recent studies, unmethylated CpG oligodeoxynucleotides that are frequently found in bacterial chromosomes, were documented to increase the antitumor function of CD8+ T cells by reducing PDâ1 expression through the ILâ12 cascade, proposing that intestinal microbiota that are positively related to antiâPDâ1 and antiâPDâL1 immunotherapy may produce some metabolites which directly suppress PDâ1 and PDâL1 expression.111, 112 Also, it seems likely that gut microbiota indirectly affect PDâL1/PDâ1 expression via both systematically or locally mediating immune functions, thus, impacting the efficacy of antiâPDâ1 and antiâPDâL1 treatment.6 For instance, polysaccharide A from B. fragilis was shown to stimulate Th1 cell responses.113 In addition, it was shown that oral feeding therapy with neomycin resulted in compromised immunity to infection by respiratory influenza virus, which was associated with significant reduction in the population of Gramâpositive bacteria in the intestine but not the nasal tract.114 Furthermore, there are wellâknown microbial agents that are directly responsible for chronic infections in humans, some of them are identified to enhance PDâ1/PDâL1 expression in host tissues.115, 116 For instance, H. pylori infection is one of the most prevalent human infections that can develop chronic active gastritis, peptic ulcers, and gastric adenocarcinoma.117, 118 Actually, H. pyloriâinfected patients have a considerable secretion level of proâinflammatory cytokines, like TNFâÎą 119, 120, 121 and higher production of PDâL1 in gastric tissue as observed in a gastric cell line model of epithelial cells.115, 119, 120 Furthermore, H. pylori suppressed the proliferation of human CD4+ T cells originated from blood sample, however, such repressive impact can be inhibited by using antibodies against PDâL1.116 Moreover, enhanced level of PDâL1 expression was observed in gastric tissues of H. pyloriâinfected patients, and also coculture of H. pyloriâinfected primary gastric epithelial cells with T cells resulted in overexpression of PDâL1 on gastric epithelial cells, which eventually led to induction of apoptosis in T cells. Taken together, these findings propose that H. pylori infection could induce a nonspecific suppression of circulating T cells, more importantly tumorâspecific T cells. Additionally, many viruses such as hepatitis B virus (HBV), hepatitis C virus (HCV), human papillomavirus (HPV), and EpsteinâBarr virus (EBV) are also capable to cause chronic infections and enhance human PDâL1/PDâ1 expression.121, 122, 123, 124
Significance of gut microbiota as a promising biomarker to predict ICI efficacy
In the past few years, there has been rapidly rising interest in identifying potential biomarkers for predicting drug response to checkpoint blockade and providing prognostic data, basically in relation to cancer immunotherapy.,Along with the progress of the highâthroughput sequencing (HTS) technology, microarray tools and largeâscale analysis methods, a great number of biomarker identification strategies have been profoundly explored and have already resulted in promising outcomes.,Recent evidence conveys the potential application of intestinal microbiota as a predictive biomarker predicting the effectiveness of hematopoietic stem cell transplantation (HSCT), chemotherapy, and antitumor immunotherapy.,,It has also been shown that modulation of the intestinal microbiota may abolish inflammatory complications caused by ICI blockade therapy, thus, supporting the importance of microbial biomarkers and signatures in predicting the inflammatory adverse events (IAE) caused by cancer immunotherapy. 43694 43694 43694 43694 43694 43694 43694 43694
Currently, the number of gut microbiome signatures as potential biomarkers that predict host response, and acquired resistance to ICI blockade treatment is rapidly expanding. In the recent years, substantial researches documented the synergistic cooperation of the certain gut microbiota with PDâ1/PDâL1/CTLAâ4 inhibitors. For instance, A. muciniphila, Alistipes indistinctus, Bacteroides, B. cepacia, D. formicigenerans, Parabacteroides merdae/distasonis, C. aerofaciens, Eubacterium spp., Veillonella parvula, Klebsiella pneumoniae, Bifidobacterium spp., Lactobacillus spp., Streptococcus parasanguinis, Blautia spp., E. hirae, E. faecium, H. filiformis, Faecalibacterium prausnitzii, and Gemmiger formicilis as well as Ruminococcaceae family have been positively associated with response to checkpoint inhibition in the preclinical and clinical studies.69, 70, 92, 94, 95, 130 However, baseline enrichment in B. thetaiotaomicron, Roseburia intestinalis, Anaerotruncus colihominis, Blautia obeum, and some combination of antibiotics have been negatively correlated with response to antiâPDâ1 and antiâCTLAâ4 blockade and compromised the efficacy of immunotherapy.69, 129, 133 Furthermore, incorporation of gut microbiotaâderived proteomics, metabolomics, and genomics data paired with composition profiling of intestinal microbiota may lead to identification of unique metabolic signatures, which can be exploited as comprehensive biomarkers predicting the response to cancer immunotherapy. 134 However, there remain several critical issues such as inaccuracies in predicting the response to immunotherapy, that have to be conveyed in order to validate the application and efficacy of the intestinal microbiota as a prognostic and predictive biomarker for immunotherapy in the clinical practice.
Limitations and possible suggestions to enhance gut microbiota efficacy in cancer immunotherapy
In spite of promising exploitation of gut microbiota in the era of immunotherapy for cancer, there are as yet some issues and challenges which need to be considered. For example, the existence of unpleasant bacterial species in the intestinal tract can negatively influence the effectiveness of immunotherapy. Commonly, antibiotics are consumed to eliminate pathogenic bacterial species, but at the same time they may cause important risks owing to lack of specificity, particularly intestinal dysbiosis. On the contrary, use of probiotics in combination with prebiotics can synergistically help the intestinal colonization and augmentation of useful microbial species, and may have a booster effect to strengthen the host antitumor immune response. Moreover, the dietary fiber components may be metabolized and converted to biomolecules with immunomodulatory effects such as butyrate as a wellâknown SCFA.Alternatively, bacteriophages (viruses that attack bacteria) have been mainly exploited in food industry to demolish pathogenic bacteria owing to their notable selectivity for certain bacterial agents. 43694 43694
Recently, several studies have demonstrated that commensal gut microbiota can provide protection against the invasion of pathogenic microbes via colonization resistance mechanism, and also induction of the native or adaptive immune response though the immunomodulatory effects. This beneficial microbiota advocates colonization resistance through direct competing for nutrients and cellular attachment sites, and also produces various inhibitory metabolites which can restrict the overgrowth of the harmful microorganisms.Furthermore, despite the brilliant outcomes of FMT in the treatment of rCDI, administration of FMT could be a promising supplementary option beside immunotherapy against various types of human cancers.,However, application of FMT in cancer immunotherapy needs addressing several important issues, particularly the selection of an ideal donor, administration route, immune status of the recipient, and the types of cancer immunotherapeutic agents used. Moreover, it is noteworthy that still there are inconsistent findings between different studies regarding the impact of gut microbiota on cancer treatment.,,,,Hence, further studies including large cohorts, and clinical trials should be performed to assess the impact of gut microbiota on the effectiveness of ICIs. 43694 43694 43694 43694 43694 43694 43694 43694
CONCLUSIONS
The era of microbiota and cancer immunotherapy has recently been introduced and is still in its infancy. Currently, some primary reports of preclinical and clinical investigations on the function of gut microbiota in cancer immunotherapy have proposed it as an appropriate and alternative approach in war on cancer. It is worth noting to identify the specific microbiota and clarify their underlying mechanisms in the context of immune checkpoint blockade. Importantly, supplementation with specific probiotics or prebiotics and restoring the favorable intestinal microbiome by applying FMT or the prevention of the unfavorable bacteria by narrowâspectrum antibiotics may improve the effectiveness of ICIs in tumor control. However, some problems and challenges stand to be addressed about how and when to manipulate intestinal microbiome to increase the potency of cancer immunotherapy. Finally, studying the potential variations in response to ICIs and exploring the possible hypotheses behind this therapeutic strategy should be accurately addressed by performing future studies in the setting of cancer immunotherapy, gut microbiome, metabolomics, proteomics, and genomics.
CONFLICT OF INTEREST
The authors have no conflict of interest to disclose.
AUTHOR CONTRIBUTIONS
SR and AY contributed to the literature review and wrote the draft of the manuscript. AY worked on concept and design of the study and interpreted the collected information. HAA and MRZ provided clinical advice and guidance for improving of the manuscript. AY critically revised the final version of the manuscript. All authors approved the final version of the manuscript and the authorship list.
Funding information
This work was supported by Foodborne and Waterborne Diseases Research Center, Research Institute for Gastroenterology and Liver Diseases, Shahid Beheshti University of Medical Sciences, Tehran, Iran.