What this is
- This research investigates the role of gut microbiota in cognitive impairment related to () in mice.
- It focuses on how diurnal variations in gut microbiota affect lipid metabolism in the hippocampus, contributing to cognitive dysfunction.
- The study utilizes behavioral tests and microbiome analysis to explore these connections.
Essence
- Gut microbiota influences cognitive impairment associated with , showing diurnal variations in lipid metabolism in the hippocampus.
Key takeaways
- Cognitive impairment from exhibits diurnal oscillations, with poorer performance in behavioral tests when surgery occurs in the evening (ZT12) vs. morning (ZT0).
- from ZT12- mice induces cognitive impairment in pseudo-germ-free mice, indicating a direct role of gut microbiota in cognitive function.
- Differential metabolites related to lipid metabolism pathways were identified between models at different times, suggesting gut microbiota's impact on hippocampal lipid metabolism.
Caveats
- The study does not explore hippocampal circadian genes and signaling pathways, limiting understanding of the mechanisms behind cognitive impairment.
- Food intake was not significantly different between groups, but its potential impact on results was not fully assessed.
Definitions
- Hepatic ischemia-reperfusion injury (HIRI): A condition resulting from the restoration of blood flow to the liver after a period of ischemia, often leading to tissue damage.
- Fecal microbiota transplantation (FMT): A procedure that involves transferring fecal bacteria from a healthy donor to restore gut microbiota balance in a recipient.
AI simplified
Introduction
Hepatic ischemia–reperfusion injury (HIRI) is one of the most common complications in the perioperative period, especially in liver surgery and transplantation [1]. In addition to influencing the hospitalization period and perioperative mortality, HIRI may also impair cognitive function in some patients, causing problems to their long-term quality of life [2]. Previous animal model studies have shown that liver injury may interfere with ammonia metabolism, causing hyperammonemia and hepatic encephalopathy, which affect cognitive function by inducing central inflammation and affecting central metabolism [3]. However, the specific mechanism of cognitive impairment caused by HIRI remains unclear.
In recent years, more and more attention has been paid to the role of gut microbiome in cognitive dysfunction. Gut microbiota plays an important role in the pathophysiological processes of various cognitive impairments related to obesity, diabetes, the postoperative phase, post-stroke, and Alzheimer’s disease [4]. Gut microbiota can influence host cognitive function impairment by regulating blood–brain barrier permeability, brain energy homeostasis, and synaptic transmission through the brain–gut axis [5]. Numerous studies have revealed associations between the gut microbiome and various types of acute liver injury (ALI) [6], induced by drugs, d-galactosamine, alcohol, and viral hepatitis. In addition, antibiotic pretreatment has been shown to alleviate HIRI and orthotopic liver transplantation outcomes in mice and humans [7], and the gut microbial metabolite to participate in the pathophysiological process of HIRI [8].
Cognitive impairment is strongly associated with circadian rhythms in both humans and animal models [9]. Liver activities, such as digestion and absorption, synthesis and uptake, assimilation, and detoxification, show significant diurnal changes, which enable their alignment with energy metabolism [10]. It is also well documented that gut microbiota undergoes diurnal oscillations both at the compositional and functional levels [11]. But while gut microbial metabolite, 1-phenyl-1,2-propanedione is involved in regulating the diurnal variation of hepatotoxicity induced by acetaminophen [12], the gut microbial metabolite, 3,4-dihydroxyphenylpropionic acid is involved in regulating the diurnal variation of HIRI [8]. However, whether the gut microbiome is implicated in cognitive impairment associated with HIRI remains unknown.
In the present study, we explored the mechanism of the diurnal variation of HIRI-related cognitive impairment in mice, by focusing on the gut microbiota.
Materials and methods
Animals
Male-specific pathogen-free (SPF) C57BL/6 mice, aged 6–8 weeks, were housed in a temperature-controlled colony room under the standard 12 h light/dark conditions (8:00, light on; 20:00, light off), with free access to food and water ad libitum. Hepatic ischemia–reperfusion injury surgery was performed at ZT0 (8:00) or ZT12 (20:00). All mice were obtained from the Beijing Vital River Laboratory Animal Technology Co., Ltd., (Beijing, China), and all experimental procedures commenced following the approval of the Institutional Animal Care and Use Committee in Tongji Hospital, Huazhong University of Science and Technology.
The mouse model of hepatic ischemia–reperfusion injury
Hepatic ischemia–reperfusion injury surgery was performed at ZT0 or ZT12 (ZT0-HIRI, n = 6; ZT12-HIRI, n = 6; ZT0-Ctr, n = 6; ZT12-Ctr, n = 6). After anesthesia with 1% pentobarbital sodium (50 mg/kg, intraperitoneal), mice were placed on an operating table, the abdominal skin was disinfected, and a median incision made to expose the liver area. The hepatic ischemia–reperfusion surgery was performed according to the method previously described [8]. Briefly, ischemia was induced by occluding the left hepatic artery and portal vein for 90 min using an artery clamp. No vascular occlusion is in sham-controlled mice. During the operation, the mice were kept warm, and the surgical incision is treated with analgesia after the operation. Behavioral tests were performed 72 h after reperfusion, and feces, liver tissue, serum, and hippocampal tissue were collected for subsequent experiments and detection.
Behavioral test
For the HIRI and control groups, behavioral experiments were performed 72 h after reperfusion. For the pseudo-germ-free mice group, behavioral experiments were performed during the next day after completion of the microbiota transfer. The open-field test, the Y-maze test, and the novel object preference test were performed to assess cognitive function. The test apparatus was wiped with 75% ethanol to eliminate odor after each experiment.
Open field test
As previously described [13], the mice were placed into the center of a black open-field chamber (L × W × H: 40 cm × 40 cm × 40 cm) after habituation. They moved freely under dim light (300 lx) for 5 min, and the total distance traveled and the time spent in the center area were analyzed.
Novel object preference test
Two identical objects were placed at two corners 6 cm from each border as previously described [13]. In the training stage, the animal was allowed to explore freely for 5 min after accommodation without objects, and the total exploration time around each object was recorded. After 2 h, the mice were placed again in the same apparatus and allowed to freely explore for 5 min with one of the identical objects being replaced with a novel object (test session). The exploration time around the novel (NT) and familiar objects (FT) was recorded and used to calculate the recognition index.
Y-maze test
As previously described [13], the Y-maze was performed with two stages in a Y-shaped compartment with three identical arms, each at an angle of 120° (L × W × H: 30 cm × 8 cm × 15 cm). The start arm (animal entry) and the common arm were always kept open, and the new arm was blocked in the first stage. Then, the mice explored the two open arms for 5 min. After 2 h, all the arms were opened, and the mice had free access to the three arms for 5 min (test trial). We recorded the time spent within each arm, the number of mice entering the new arm, and the total distance traveled by the mice for analysis.
Hematoxylin and eosin (HE) staining
Liver specimens were processed using standard HE procedures, including steps, such as dehydration, embedding, sectioning, and tissue staining. The staining was scanned on each slide and the degree of liver damage was graded using the Suzuki’s score [8].
Pseudo-germ-free mice and fecal microbial transplantation
Microbiota depletion and fecal microbiota transplantation (FMT) were performed as described previously [8]. For pseudo-germ-free mice, C57BL/6 mice received vancomycin (100 mg/kg), neomycin sulfate (200 mg/kg), metronidazole (200 mg/kg), and ampicillin (200 mg/kg) intra-gastrically once daily for 4 days. For fecal microbial transplantation, donor mice feces from the ZT0-Ctr, ZT0-HIRI, ZT12-Ctr, and ZT12-HIRI groups were collected and re-suspended in phosphate-buffered saline (PBS) to a concentration of 0.125 g/mL. This suspension was administered to mice via oral gavage (0.15 mL) daily for 3 days. Pseudo-germ-free mice receiving FMT were divided into four groups: P-ZT0-Ctr (n = 6), P-ZT0-HIRI (n = 6), P-ZT12-Ctr (n = 6), and P-ZT12-HIRI (n = 6), and the behavioral experiments were performed during the next day after FMT.
16S rRNA microbiome sequencing
After the behavioral tests, fecal samples were obtained, snap-frozen, and stored at − 80 °C. The 16S rRNA sequencing of the microbiota was performed at the OE biotech Co., Ltd. (Shanghai, China). Fecal samples were subjected to DNA extraction, amplification, library construction, and sequencing (Illumina Inc., San Diego, CA; OE Biotech Company; Shanghai, China) to obtain raw data in FASTQ format. The software and platform (https://cloud.oebiotech.cn/task/↗) provided by the company were used for further bioinformatic analysis of the raw data.
LC–MS analysis of fecal metabolites and lipid metabolomics in the hippocampus
The key steps of LC–MS analysis included fecal samples or hippocampus pretreatment, metabolite extraction, full-scan LC–MS detection, data pretreatment, and statistical analysis. The analytical instrument for this experiment was a Dionex U3000 UHPLC LC–MS system consisting of a QE plus high-resolution mass spectrometer, and the original LC–MS data were processed by software Progenesis QI V2.3 (Nonlinear, Dynamics, Newcastle, the UK). Variable Importance of Projection (VIP) values obtained from the OPLS-DA model were used to rank the overall contribution of each variable to group discrimination. A two-tailed Student’s T test was further used to verify whether the differences in metabolites between groups were significant. Differential metabolites were selected with VIP values greater than 1.0 and p values less than 0.05.
Statistical analysis
All the quantification data were expressed as means ± SEM, with error bars representing SEM. The normality distribution assessment was evaluated by the Kolmogorov–Smirnov test, and differences among the groups were assessed by one-way analysis of variance (ANOVA), followed by Tukey’s multiple comparisons test, and p < 0.05 was considered statistically significant. Statistical analyses and graphs (except for some data from 16S rRNA microbiome sequencing analyses and LC–MS) were performed with the GraphPad Prism 6.0 and Adobe Photoshop 22.1.1.
Results
Cognitive impairment caused by HIRI underwent diurnal oscillations

Liver injury and cognitive impairment in the mouse model of hepatic ischemia–reperfusion injury under ZT0/ZT12. Four groups: ZT0-HIRI,= 6; ZT12-HIRI,= 6; ZT0-Ctr,= 6; ZT12-Ctr,= 6.Schematic illustration of the experimental design.The light microscopy and Suzuki’s score of liver tissues (= 3). Hematoxylin and eosin (H&E). Magnification × 100.Serum levels of ALT and AST (= 3–4); Blood ammonia concentration (= 4).Cognitive behavior test (open-field test, Y-maze test and novel object preference test;= 6). One-Way ANOVA (Tukey’s multiple comparisons test); *< 0.05, ***< 0.001 n n n n n n n n p p A B C D
ZT12-HIRI mice showed abnormal gut microbiota composition

The composition of gut microbiota was different between the ZT0 and ZT12 groups.Alpha Diversity (Simpson index).Beta Diversity (PCoA).The relative abundance of bacteria at the genus level. All genera with an average relative abundance below 1% were grouped to “others.”LEfSe analysis.Heatmap of differential species at the genus level A B C D E
Diurnal differences in metabolites of gut microbiota in HIRI mice

Diurnal differences in fecal metabolites in HIRI mice.OPLS-DA plot.Volcano plot of differential metabolites.Cluster plot of the top 50 differential metabolites.Box plot of the top different metabolites.KEGG pathway enrichment analysis of differential metabolites. T test; *< 0.05, ***< 0.001 A B C D E p p
Fecal microbiota transplantation (FMT) induced cognitive impairment behaviors and reshaped the gut microbiome in pseudo germ-free mice

Microbiota from ZT12-HIRI mice induced cognitive impairment behavior and abnormal gut microbiota composition compared with ZT0-HIRI mice. Four groups: P-ZT0-HIRI,= 6; P-ZT12-HIRI,= 6; P-ZT0-Ctr,= 6; P-ZT12-Ctr,= 6.The light microscopy and Suzuki’s score of liver tissues (n = 3). Hematoxylin and eosin (H&E). Magnification × 100.Serum levels of ALT and AST (= 3–4).Cognitive behavior test (open-field test, Y-maze test and novel object preference test;= 6).Alpha Diversity (Simpson index).Beta Diversity (PCoA). () Heatmap of differential species at the genus level. One-Way ANOVA (Tukey’s multiple comparisons test); *< 0.05, **< 0.01 n n n n n n p p A B C D E F
Differences in lipid metabolomic profiles in the hippocampus of pseudo germ-free mice receiving FMT

Lipidomics perturbations in the hippocampus of mice transplanted with fecal microbiota of the HIRI model.PCA (principal component analysis).Volcano plot of differential metabolites.Cluster plot of the top 50 differential metabolites.Pearson correlation coefficient of the top 20 differential metabolites. Red/Blue indicates a positive/negative correlation, respectively, and blue indicates a correlation. The size of the dots represents the magnitude of the correlation coefficient.Box plot of the top different metabolites.KEGG pathway enrichment analysis of differential metabolites.Phosphatidylethanolamine,Phosphatidylcholine,Phosphatidylinositol,Lysophosphatidylethanolamine;Phosphatidylmethanol,Phosphatidylserine,Lysophosphatidylcholine,Triglyceride. T test; *< 0.05, **< 0.01, ***< 0.001 A B C D E F PE PC PI LPE PMe PS LPC TG p p p
Discussion
Liver is a major metabolic organ as well as the main peripheral circadian organ, and its damage may lead to dyshomeostasis of extrahepatic organs, including the central nervous system and gut [16, 17]. Our current study showed that HIRI caused significant liver pathological damage and induced cognitive impairment, which is consistent with earlier studies [18]. Interestingly, we illustrated that cognitive impairment caused by HIRI underwent diurnal oscillations. Specifically, the composition of gut microbiota had significant difference between the HIRI and control groups as well as diurnal differences between the ZT0 and ZT12 groups. Furthermore, gut microbiota transplantation from the ZT12-HIRI was shown to transmit cognitive impairment behavior. These findings suggest a direct association between gut microbiota and the diurnal variation of HIRI-related cognitive dysfunction.
In recent years, the circadian rhythm has attracted tremendous attention due to its substantial role in regulating physiology and behavior. Evidence from animal experiments shows that HIRI is more severe in the evening when compared with the morning after 90 min of ischemia and 6 h of reperfusion [8]. Nevertheless, clinical data from Ren et al. suggest that circadian rhythms have a significant impact on surgical outcomes of liver transplantation for patients [19]. Our current data, however, indicate that the histopathologic changes and serum ALT/AST had no significant difference in the evening (ZT12-HIRI) when compared with the morning (ZT0-HIRI) after 90 min of ischemia and 72 h of reperfusion. What did differ was HIRI-related cognitive functions. Compared with the ZT0-HIRI, the ZT12-HIRI group performed poorly on the Y-maze test and the novel object preference test due to impaired spatial working and reference memory and non-spatial visual learning memory. The observed change in histopathology and serum transaminase levels between the ZT0 and ZT12 in this study is not consistent with the study conducted by Chen et al. [8]. We speculate that this might be due to different reperfusion times.
Gut microbiota, in both mice and humans, exhibit diurnal oscillations that are influenced by feeding rhythms, and involved in the regulation of a variety of pathophysiological activities [20, 21]. The compositions of gut microbiota and metabolites, such as SCFAs, secondary bile acids (Bas), and 5-hydroxytryptamine (5-HT), are closely related to systemic metabolism and function, and related studies have shown that gut microbiota have potential neuroprotective effects [22]. We showed that the composition of gut microbiota had diurnal differences between the ZT0-HIRI and ZT12-HIRI. The limitation is that our current results can only suggest that alterations in the gut microbiota may be the result of a combination of hepatic ischemia–reperfusion and circadian rhythms. To further explore the relationship between gut microbiota and diurnal differences in HIRI-related cognitive function, we established pseudo-germ-free mice and transplanted in them fecal microbiota from HIRI mice. We found that gut microbiota transplantation from the ZT12-HIRI influenced cognitive impairment behavior. Microbial metabolites are one of the important mechanisms for gut-to-brain communication [23]. We analyzed the differences in metabolites of gut microbiota between the ZT0-HIRI and ZT12-HIRI, and a total of 387 metabolites of intestinal flora with significant differences were detected in the ZT12-HIRI compared with the ZT0-HIRI, including 183 which were up-regulated and 204 down-regulated. Among them, some differentially expressed metabolites, such as LysoPE, PC, and LysoPC, had been shown to be involved in the regulation of cognitive impairment [24]. The KEGG pathway enrichment analysis demonstrated that the differential metabolites were significantly enriched in lipid metabolism pathways, such as the glycero-phospholipid metabolism, sphingolipid metabolism, alpha-linolenic acid metabolism, and fat digestion and absorption. In addition, to investigate whether the differences in gut microbiota composition and metabolites between ZT0 and ZT12 were related to feeding, we calculated the food consumption of two groups (ZT0-HIRI vs. ZT12-HIRI) during the first 72 h of reperfusion and found that there were no significant differences in food intake among them (Data are not presented in this article). However, since we do not further compare the gut microbiota and metabolites between the two groups of pseudo-germ-free that had been kept under the same primary condition following FMT, we cannot fully determine the interference of feeding on the experimental results.
Previous studies have associated liver-related cognitive impairment with blood ammonia concentration and hippocampal inflammatory factors [3]. Our experimental data showed that there were no significant differences in blood ammonia concentration and hippocampal levels of inflammatory cytokines (IL-1β, TNF-α, and NF-κB) between ZT0-HIRI and ZT12-HIRI groups as well as P-ZT0-HIRI and P-ZT12-HIRI groups. So we speculated that there may be other mechanisms affecting circadian oscillation in HIRI-related cognitive function. Lipid metabolism is closely related to liver metabolism, gut microbiota, and cognitive function [25]. Compared to conventional mice, germ-free mice on chow-diet display reduced levels of multiple lipid molecules, concomitant with increased liver cholesterol, and decreased triglyceride content [14]. Cross-validation analysis of data from a Life-Lines-DEEP study reported that microbiota explained 4.5% of the variance in body mass index, 6% in triglycerides, and 4% in high-density lipoproteins [26]. In terms of cognitive function, a study by Bowers et al. indicated that lipid metabolism disorder in the hippocampus is a key factor affecting neural stem/progenitor cell activity and cognitive function [15]. Data from Li et al. also indicated that neuronal cholesterol metabolism in the hippocampus is closely related to memory histone acetylation-mediated memory [27]. By analyzing lipid metabolism in the hippocampus of FMT treated germ-free mice, we found a large number of differentially expressed lipid molecules between the P-ZT0-HIRI and P-ZT12-HIRI. Compared with the P-ZT0-HIRI, a total of 78 lipid molecules with significant differences were detected in the ZT12-HIRI, including 34 which were up-regulated and 44 down-regulated, suggesting that gut microbiota might affect cognitive function in HIRI mice by altering lipid metabolism in the central nervous system. As a limitation, our current study does not examine hippocampal circadian genes and signaling pathways, such as the light signal and the CLOCK genes, which have previously linked circadian oscillations, and hippocampus and cognitive functions [28–30].
Conclusions
To summarize, our findings show that HIRI-related cognitive impairment undergoes diurnal oscillations, and gut microbiota may be involved in circadian differences of cognitive function by affecting hippocampal lipid metabolism. Our current study provides new insights into the “liver-gut-brain” axis in the context of HIRI.
Supplementary Information
Below is the link to the electronic supplementary material. Supplementary file1 (DOCX 113 KB)